123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN127974
Parameters: 2 7 7 80 10 50 500
Length: 525605
Tables: 1
This is table 1 of 1 ( 48 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4733--4758 6 4.3 6 100 0 52 15 19 0 65 1.27
14113--14174 21 3.0 21 78 0 61 12 29 24 33 1.92
33237--33261 13 1.9 13 100 0 50 36 0 32 32 1.58
48548--48605 29 2.0 29 90 6 91 17 24 13 44 1.85
59716--59777 31 2.0 31 100 0 124 16 22 29 32 1.95
61191--61228 19 2.0 19 100 0 76 26 21 15 36 1.93
63939--63971 16 2.1 16 100 0 66 39 12 30 18 1.87
85017--85087 22 3.2 22 78 7 81 36 23 16 22 1.94
85425--85564 70 2.0 70 100 0 280 37 22 21 18 1.94
89302--89326 13 1.9 13 100 0 50 52 0 24 24 1.48
102032--102074 21 2.0 21 95 0 77 20 25 18 34 1.96
131683--131727 22 2.0 22 100 0 90 15 17 13 53 1.73
140835--140859 12 2.1 12 100 0 50 44 8 16 32 1.76
141606--141700 48 2.0 48 95 0 172 32 21 22 24 1.98
173381--173434 25 2.2 25 93 3 92 11 37 35 16 1.84
176341--176387 23 2.0 23 95 0 85 40 4 23 31 1.74
203412--203569 39 4.1 39 95 0 271 37 20 21 20 1.94
217752--217811 29 2.1 29 100 0 120 48 16 13 21 1.80
221703--221745 22 2.0 22 90 0 68 20 27 16 34 1.94
240238--240341 36 2.9 36 98 0 199 49 7 11 31 1.67
240247--240341 18 5.2 19 70 10 90 49 7 10 32 1.65
253886--253916 16 1.9 16 93 0 53 29 25 22 22 1.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
265831--265873 21 2.0 21 95 0 77 37 4 23 34 1.76
301150--301194 22 2.0 22 100 0 90 15 17 13 53 1.73
310302--310326 12 2.1 12 100 0 50 44 8 16 32 1.76
311073--311167 48 2.0 48 95 0 172 32 21 22 24 1.98
343058--343115 25 2.2 26 78 12 64 31 10 22 36 1.88
343065--343117 25 2.2 25 86 6 74 26 9 24 39 1.86
343073--343125 25 2.1 25 100 0 106 22 11 22 43 1.85
363311--363370 29 2.1 29 100 0 120 48 16 13 21 1.80
367262--367304 22 2.0 22 90 0 68 20 27 16 34 1.94
378541--378615 35 2.1 35 95 0 132 26 13 33 26 1.93
398282--398309 11 2.5 11 100 0 56 71 0 21 7 1.09
440172--440211 18 2.3 18 91 4 64 15 47 27 10 1.77
447724--447758 17 2.1 17 100 0 70 28 22 11 37 1.89
456498--456568 22 3.2 22 78 7 81 36 23 16 22 1.94
456906--457045 70 2.0 70 100 0 280 37 22 21 18 1.94
460783--460807 13 1.9 13 100 0 50 52 0 24 24 1.48
466529--466590 30 2.1 30 96 0 115 37 20 8 33 1.83
468763--468831 35 2.0 35 100 0 138 26 26 11 36 1.90
468768--468842 35 2.1 35 87 4 107 29 24 14 32 1.95
479399--479484 43 2.0 43 100 0 172 18 20 34 25 1.96
486084--486115 15 2.1 15 100 0 64 12 34 37 15 1.85
487010--487035 12 2.2 12 100 0 52 57 15 0 26 1.38
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
488841--488904 32 2.0 32 100 0 128 50 12 25 12 1.75
489370--489432 31 2.0 31 100 0 126 22 22 22 33 1.97
515599--515639 19 2.2 19 90 0 64 29 14 43 12 1.82
520803--520855 25 2.1 25 100 0 106 43 22 11 22 1.85
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Tables: 1
The End!