123.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: MW324678
    Parameters: 2 7 7 80 10 50 500
    Length:  197486

    Tables:   1   

    This is table  1  of  1  ( 83 repeats found )

    Click on indices to view alignment

Table Explanation

  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  2944--2976                        17       1.9      17          88        11        50      51   0    3    45   1.16

  3066--3159                        40       2.3      42          82        10        122     56   0    1    42   1.06

  3103--3151                        25       1.9      26          87        4         73      53   0    0    46   1.00

  3101--3159                        25       2.4      25          77        5         66      55   0    0    44   0.99

  3225--3260                        13       2.7      13          95        4         63      83   13   0    2    0.76

  6236--6281                        12       3.8      12          100       0         92      69   0    15   15   1.19

  6314--6391                        33       2.4      33          93        0         138     48   2    28   20   1.62

  7635--7673                        5        7.8      5           88        11        62      58   0    2    38   1.12

  9723--9768                        21       2.2      21          88        0         65      43   6    0    50   1.28

  9735--9771                        3        12.3     3           88        0         56      40   0    0    59   0.97

  10633--10684                      22       2.4      21          78        9         59      59   3    3    32   1.33

  11627--11666                      17       2.3      18          87        8         57      32   0    2    65   1.06

  12965--13013                      18       2.6      19          74        3         55      51   2    2    44   1.24

  14592--14635                      13       3.6      13          83        16        51      61   0    0    38   0.96

  14718--14757                      17       2.2      17          86        8         53      40   0    2    57   1.12

  26242--26308                      33       2.0      33          83        11        84      35   5    2    55   1.40

  28811--28853                      20       2.0      22          86        8         63      37   0    6    55   1.27

  32319--32356                      11       3.7      10          83        16        51      13   0    0    86   0.56

  32317--32366                      14       3.5      15          83        10        52      18   0    0    82   0.68

  32324--32366                      13       3.2      13          90        3         59      13   0    0    86   0.58

  32319--32366                      13       3.8      12          81        13        53      14   0    0    85   0.60

  32319--32366                      24       2.0      23          88        4         69      14   0    0    85   0.60

  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  32320--32374                      10       5.7      10          81        12        53      18   0    0    81   0.68

  32334--32375                      13       3.1      14          86        10        52      21   0    0    78   0.75

  32322--32374                      24       2.2      24          83        6         63      18   0    0    81   0.70

  32352--32440                      45       2.0      46          80        10        103     43   1    0    55   1.07

  32389--32453                      12       5.6      12          74        18        57      52   1    0    46   1.10

  32415--32475                      13       4.6      14          75        19        51      54   3    0    42   1.17

  32956--32986                      16       1.9      16          93        0         53      45   0    0    54   0.99

  32947--33009                      30       2.1      29          85        8         83      42   0    0    57   0.99

  33682--33717                      5        7.2      5           100       0         72      38   0    0    61   0.96

  40673--40728                      23       2.4      23          100       0         112     30   10   3    55   1.51

  41183--41235                      10       5.3      10          93        0         79      37   5    0    56   1.23

  41183--41235                      5        10.6     5           83        0         70      37   5    0    56   1.23

  43308--43356                      20       2.5      20          82        0         71      32   4    0    63   1.13

  43307--43356                      9        5.0      10          74        16        50      32   4    0    64   1.12

  43309--43367                      30       2.0      29          87        9         84      35   3    0    61   1.13

  44373--44423                      22       2.3      22          82        0         66      66   0    0    33   0.92

  45490--45523                      11       3.1      11          95        0         59      11   0    0    88   0.52

  45489--45521                      14       2.4      14          95        5         59      9    0    0    90   0.44

  46798--46825                      11       2.5      11          100       0         56      75   0    0    25   0.81

  53316--53345                      13       2.3      13          100       0         60      90   10   0    0    0.47

  58353--58390                      15       2.3      17          86        13        53      36   5    0    57   1.21

  59819--59885                      11       6.1      11          100       0         134     19   26   35   17   1.94

  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  60912--60973                      12       5.2      12          100       0         124     17   32   33   16   1.92

  64379--64428                      18       2.7      18          81        6         55      44   0    2    54   1.11

  65000--65039                      21       2.0      21          85        5         55      40   0    12   47   1.41

  67306--67344                      18       2.2      18          95        0         69      51   0    7    41   1.31

  74271--74304                      13       2.7      13          90        4         52      52   0    0    47   1.00

  77095--77137                      19       2.3      19          80        4         52      65   0    0    34   0.93

  79106--79152                      17       2.7      18          78        15        55      59   0    0    40   0.97

  84222--84261                      18       2.2      18          86        4         53      65   5    0    30   1.14

  86761--86864                      42       2.5      42          80        1         102     22   11   8    57   1.60

  86783--86859                      21       3.7      21          81        6         93      22   7    9    61   1.52

  86800--86870                      21       3.4      21          84        7         99      23   9    5    60   1.50

  88556--88588                      8        4.1      8           100       0         66      24   27   48   0    1.51

  89285--89318                      13       2.6      13          95        0         59      14   2    0    82   0.79

  89256--89338                      24       3.1      25          76        13        78      24   3    0    72   1.01

  90223--90319                      36       2.7      36          86        0         140     25   12   10   51   1.71

  93193--93232                      16       2.4      16          87        8         53      35   2    2    60   1.24

  93446--93515                      7        10.0     7           100       0         140     14   14   14   57   1.66

  97378--97407                      13       2.3      13          94        0         51      30   6    40   23   1.80

  98087--98131                      11       4.1      11          94        0         81      17   24   26   31   1.97

  108315--108358                    11       3.8      11          82        8         52      43   0    0    56   0.99

  108313--108365                    16       3.3      16          82        10        63      41   1    0    56   1.10

  108323--108360                    9        4.4      9           87        12        62      44   0    0    55   0.99

  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  108416--108454                    9        4.3      9           96        0         69      48   0    0    51   1.00

  114278--114348                    7        9.1      8           76        13        60      74   0    0    25   0.82

  114286--114362                    8        10.6     7           72        17        50      74   0    1    24   0.90

  114281--114352                    23       3.2      22          75        20        69      75   0    0    25   0.81

  114290--114365                    14       5.3      14          78        20        77      75   0    1    23   0.89

  134796--134867                    26       2.9      24          76        11        74      62   6    2    27   1.35

  136172--136205                    16       2.0      18          88        11        54      61   0    5    32   1.20

  141406--141454                    15       3.4      14          83        11        64      73   2    0    24   0.94

  146672--146696                    13       1.9      13          100       0         50      28   0    0    72   0.86

  147257--147294                    18       2.1      18          90        9         60      34   0    2    63   1.09

  155768--155801                    16       2.1      16          88        5         50      61   0    2    35   1.11

  160512--160562                    22       2.2      23          89        6         77      66   1    1    29   1.13

  165583--165613                    13       2.4      13          100       0         62      19   41   6    32   1.77

  175495--175526                    15       2.1      16          88        11        50      68   0    3    28   1.04

  185022--185075                    26       2.0      28          83        16        71      44   1    7    46   1.42

  185647--185672                    12       2.2      12          100       0         52      30   0    7    61   1.24

  193519--193554                    18       1.9      19          88        5         56      52   2    13   30   1.55
  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!