123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MZ504724
Parameters: 2 7 7 80 10 50 500
Length: 884352
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
77433--77475 18 2.4 18 81 18 54 34 25 20 18 1.96
91391--91467 38 2.0 38 94 0 136 14 37 11 36 1.82
145164--145189 13 2.0 13 100 0 52 38 15 30 15 1.88
172489--172559 24 3.0 24 97 0 133 23 30 0 45 1.54
174412--174445 15 2.3 15 94 0 59 23 0 52 23 1.47
181306--181356 21 2.4 21 90 0 75 7 35 9 47 1.66
181353--181393 15 2.7 15 88 0 55 9 31 14 43 1.78
199045--199147 24 4.4 24 89 3 131 13 24 13 48 1.78
200683--200731 24 2.0 24 84 0 62 32 22 14 30 1.93
200998--201027 15 2.0 15 100 0 60 60 0 26 13 1.34
201029--201095 18 3.7 18 84 7 100 14 4 58 22 1.55
201029--201110 36 2.3 36 97 0 155 15 4 58 20 1.56
201029--201106 18 4.3 18 82 9 97 16 5 57 20 1.58
201869--201936 15 4.5 15 81 7 75 35 4 29 30 1.77
201865--201949 30 2.8 30 80 7 100 34 4 29 31 1.78
210654--210735 39 2.0 41 90 6 132 20 28 19 31 1.97
226974--227009 18 2.0 18 88 0 54 52 25 13 8 1.68
277720--277753 14 2.5 13 90 4 50 26 17 5 50 1.69
330347--330375 15 1.9 15 100 0 58 13 27 13 44 1.82
390331--390362 16 2.0 16 100 0 64 37 12 12 37 1.81
396432--396481 21 2.4 21 79 0 64 24 40 18 18 1.91
450265--450311 24 2.0 24 91 0 76 25 25 21 27 1.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
475941--476050 56 2.0 56 100 0 220 32 20 18 28 1.96
486317--486341 12 2.1 12 100 0 50 0 32 28 40 1.57
486401--486427 12 2.2 12 100 0 54 44 14 14 25 1.84
499356--499397 21 2.0 21 95 0 75 35 19 19 26 1.95
516999--517035 18 2.0 19 89 5 58 37 16 27 18 1.92
544210--544245 16 2.2 16 100 0 72 50 33 11 5 1.61
597217--597250 14 2.5 13 90 4 50 50 5 17 26 1.69
618754--618796 18 2.4 18 88 7 61 30 27 20 20 1.98
621824--621866 21 2.0 22 86 13 63 53 6 27 11 1.63
626390--626417 14 2.0 14 100 0 56 42 14 14 28 1.84
629382--629409 14 2.0 14 100 0 56 35 7 21 35 1.81
647865--647901 18 2.1 18 94 0 65 24 21 48 5 1.71
668705--668769 21 3.0 22 77 20 75 21 21 24 32 1.98
673904--673938 19 1.9 18 88 11 54 31 25 8 34 1.86
716580--716610 15 2.1 15 93 0 53 32 19 29 19 1.96
760870--760914 21 2.1 21 95 0 81 51 15 22 11 1.75
795646--795687 21 2.0 21 90 0 66 21 21 38 19 1.94
838233--838273 21 2.0 21 90 0 64 36 21 21 19 1.95
839225--839260 16 2.2 16 90 0 54 58 5 8 27 1.50
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Tables: 1
The End!