123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_012119
Parameters: 2 7 7 80 10 50 500
Length: 773279
Tables: 1
This is table 1 of 1 ( 74 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2742--2774 12 2.7 13 86 13 52 24 12 21 42 1.86
10708--10737 2 15.0 2 92 0 51 53 0 0 46 1.00
10711--10740 14 2.1 14 100 0 60 56 0 0 43 0.99
17284--17308 9 2.8 9 100 0 50 8 44 24 24 1.80
42211--42258 24 2.0 24 100 0 96 41 12 8 37 1.73
59535--59658 34 3.6 34 74 14 114 20 33 19 25 1.96
66767--66801 18 2.1 16 89 10 52 68 0 8 22 1.16
72258--72312 16 3.4 16 72 22 60 34 9 36 20 1.84
72245--72343 33 2.9 33 93 3 162 32 10 37 20 1.86
76602--76694 43 2.2 43 96 0 177 20 32 27 19 1.97
82130--82222 16 5.5 16 67 11 51 21 37 16 24 1.93
106430--106506 30 2.6 30 100 0 154 19 29 27 23 1.98
123752--123777 13 2.0 13 100 0 52 15 30 15 38 1.88
133771--133872 36 2.9 36 82 5 129 46 16 16 20 1.85
133772--133873 33 3.0 33 84 4 123 45 16 16 21 1.86
159847--159899 25 2.1 25 93 6 90 35 11 22 30 1.89
167143--167173 15 2.1 15 100 0 62 35 12 12 38 1.82
167179--167218 20 2.0 20 100 0 80 25 0 15 60 1.35
177296--177337 14 3.0 14 80 13 59 42 7 0 50 1.30
197791--197896 35 3.1 35 89 5 180 24 34 14 26 1.93
197773--197887 33 3.4 33 86 4 167 24 33 14 26 1.94
212994--213048 27 2.0 27 100 0 110 18 30 14 36 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
228313--228373 15 4.3 15 76 16 58 36 1 39 22 1.64
265886--265940 27 2.1 26 82 3 65 1 36 16 45 1.58
267409--267461 22 2.7 18 74 20 52 47 1 0 50 1.12
271605--271634 15 2.0 15 100 0 60 33 13 20 33 1.91
286162--286219 24 2.4 24 97 0 107 44 8 43 3 1.51
312919--312968 19 2.6 19 100 0 100 24 12 38 26 1.90
316330--316385 17 3.4 17 71 14 62 26 32 14 26 1.95
316328--316410 33 2.5 33 100 0 166 28 32 15 22 1.95
316347--316401 16 3.4 16 71 14 58 30 29 16 23 1.96
319495--319594 16 6.2 16 71 6 76 25 35 15 25 1.94
319454--319594 32 4.3 31 78 6 75 25 34 16 24 1.95
319511--319594 33 2.6 32 83 10 109 25 33 15 26 1.95
332478--332541 22 3.0 22 81 9 78 50 0 0 50 1.00
332481--332536 24 2.3 24 78 6 60 50 0 0 50 1.00
332478--332542 8 8.1 8 75 24 50 50 0 0 49 1.00
335398--335429 11 2.6 13 90 9 50 25 12 6 56 1.59
354492--354531 18 2.2 18 86 8 55 40 12 0 47 1.41
354545--354589 2 23.5 2 86 8 67 51 0 0 48 1.00
356374--356407 2 17.0 2 90 0 50 44 2 0 52 1.16
368934--368983 2 26.5 2 80 11 61 50 0 2 48 1.12
368926--368978 16 3.3 15 85 12 70 47 0 3 49 1.19
368934--368983 13 3.6 15 76 13 54 50 0 2 48 1.12
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
435398--435466 21 3.4 21 88 4 97 27 18 36 17 1.94
455273--455318 22 2.1 22 100 0 92 30 19 36 13 1.90
466075--466105 15 2.1 15 100 0 62 12 12 19 54 1.70
500536--500568 16 2.1 16 100 0 66 18 42 12 27 1.85
506639--506691 24 2.2 24 93 3 90 18 32 16 32 1.94
526286--526326 21 2.0 21 95 0 73 34 9 26 29 1.88
541825--541914 43 2.1 43 97 0 171 18 27 32 21 1.97
566380--566472 33 2.7 35 77 9 111 24 35 13 25 1.93
570455--570497 18 2.4 18 81 18 54 34 25 20 18 1.96
582115--582179 33 2.0 33 96 0 121 26 15 32 26 1.95
590877--590926 2 25.5 2 86 11 68 46 2 0 52 1.12
590878--590928 26 1.9 26 96 4 93 45 1 0 52 1.12
610376--610454 39 2.0 39 97 0 149 31 18 27 21 1.97
611122--611236 2 63.0 2 71 20 83 51 0 0 46 1.13
611435--611464 15 2.0 15 93 0 51 30 0 33 36 1.58
619821--619877 17 3.4 17 67 13 55 31 12 36 19 1.89
629973--630075 38 2.6 39 80 7 120 53 0 1 44 1.11
629976--630075 35 2.9 36 82 7 118 53 0 2 45 1.12
629973--630059 2 44.5 2 75 4 79 51 0 1 47 1.08
641091--641180 4 22.5 4 100 0 180 74 0 0 25 0.82
646668--646898 69 3.4 68 79 7 204 19 21 27 32 1.97
652000--652026 13 2.1 13 100 0 54 22 29 0 48 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
653867--653896 12 2.5 12 94 0 51 46 6 23 23 1.75
658066--658097 15 2.1 15 94 0 55 43 6 0 50 1.27
670815--670853 11 3.7 11 86 13 64 64 0 0 35 0.94
670809--670851 20 2.2 20 95 0 77 58 0 0 41 0.98
699416--699444 13 2.2 13 100 0 58 27 13 0 58 1.36
708276--708336 16 3.8 16 75 12 61 24 29 16 29 1.96
712077--712157 33 2.5 33 86 10 121 28 32 16 23 1.96
751040--751089 22 2.2 23 96 3 93 36 16 0 48 1.46
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Tables: 1
The End!