123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_023338
Parameters: 2 7 7 80 10 50 500
Length: 459678
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12143--12185 20 2.1 21 82 4 52 16 39 16 27 1.90
57318--57357 20 2.0 20 100 0 80 30 10 25 35 1.88
92836--92882 24 2.0 24 91 0 76 27 21 25 25 1.99
116768--116897 64 2.0 64 100 0 260 13 20 24 42 1.87
118107--118157 26 1.9 27 88 4 77 45 17 21 15 1.86
152344--152401 30 1.9 30 85 0 80 39 25 17 17 1.91
165562--165604 18 2.4 18 81 18 54 34 25 20 18 1.96
168222--168349 64 2.0 64 100 0 256 20 25 18 35 1.95
181568--181626 13 4.5 13 97 0 109 37 23 8 30 1.85
182867--182895 12 2.3 13 94 5 51 31 24 24 20 1.98
196900--196941 12 3.5 12 86 0 57 4 38 38 19 1.73
204628--204673 16 2.8 17 80 6 58 13 17 21 47 1.81
209812--209859 22 2.1 23 88 3 71 27 31 16 25 1.97
218029--218128 45 2.2 45 100 0 200 32 19 28 21 1.97
233309--233455 51 2.9 51 95 0 267 27 12 28 31 1.92
243892--243958 30 2.2 30 100 0 134 14 25 40 19 1.90
259434--259512 39 2.0 39 97 0 149 31 18 27 21 1.97
268428--268556 62 2.1 62 100 0 258 24 26 10 38 1.88
275225--275260 18 1.9 19 88 5 56 36 8 36 19 1.82
298549--298614 26 2.5 26 80 9 89 39 21 19 19 1.93
305933--305972 21 1.9 21 85 10 55 5 42 0 52 1.23
353257--353405 75 2.0 75 100 0 298 24 17 26 32 1.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
354857--354881 9 2.8 9 100 0 50 24 32 0 44 1.54
374708--374739 9 3.6 9 91 0 55 15 37 9 37 1.80
436816--436873 30 1.9 30 86 6 82 29 15 22 32 1.95
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Tables: 1
The End!