123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031164
Parameters: 2 7 7 80 10 50 500
Length: 300784
Tables: 1
This is table 1 of 1 ( 15 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7520--7583 30 2.1 30 91 0 101 20 25 25 29 1.99
27145--27181 16 2.3 16 95 0 65 48 5 13 32 1.65
28420--28480 5 12.2 5 100 0 122 60 0 19 19 1.36
32914--32965 27 1.9 27 96 0 95 38 11 21 28 1.88
37485--37564 40 2.0 40 100 0 160 30 25 25 20 1.99
49116--49159 21 2.1 21 95 0 79 50 13 11 25 1.75
52138--52178 20 2.0 20 95 0 73 24 21 7 46 1.77
63170--63197 11 2.5 11 100 0 56 71 0 21 7 1.09
65120--65145 13 2.0 13 100 0 52 23 15 15 46 1.83
79773--79797 12 2.1 12 100 0 50 20 32 16 32 1.94
128216--128253 19 2.0 19 100 0 76 21 21 15 42 1.89
170634--170677 21 2.1 21 95 0 79 25 11 13 50 1.75
232988--233032 22 2.0 22 95 0 81 37 22 22 17 1.94
271143--271171 15 1.9 15 100 0 58 20 17 34 27 1.95
272012--272075 21 2.9 21 86 9 83 25 15 32 26 1.95
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!