123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031696
Parameters: 2 7 7 80 10 50 500
Length: 678653
Tables: 1
This is table 1 of 1 ( 92 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2857--2881 11 2.3 11 100 0 50 28 20 16 36 1.93
21044--21087 14 3.0 15 80 12 56 43 0 4 52 1.22
21044--21119 24 2.9 28 79 15 83 43 0 2 53 1.14
21097--21163 6 11.2 6 75 15 50 44 0 0 55 0.99
21062--21167 56 1.9 54 83 11 135 43 0 0 55 1.06
21054--21167 34 3.3 36 75 16 107 44 0 0 54 1.06
41801--41832 15 2.0 17 88 11 50 0 37 15 46 1.46
59564--59656 3 28.7 3 72 20 55 34 0 0 65 0.93
59587--59655 14 4.9 14 76 15 63 34 0 0 65 0.93
59599--59653 17 3.4 17 85 14 89 36 0 0 63 0.95
59564--59653 31 3.3 29 85 14 113 34 0 0 65 0.93
64086--64123 20 1.9 20 88 0 58 34 15 28 21 1.94
73586--73611 13 2.0 13 100 0 52 15 23 23 38 1.92
83920--84046 63 2.0 63 96 0 236 22 19 36 21 1.95
101172--101240 2 37.0 2 77 13 76 50 0 0 49 1.00
101169--101240 24 3.0 25 86 9 107 51 0 0 48 1.00
124433--124525 3 28.7 3 72 20 55 34 0 0 65 0.93
124456--124524 14 4.9 14 76 15 63 34 0 0 65 0.93
124468--124522 17 3.4 17 85 14 89 36 0 0 63 0.95
124433--124522 31 3.3 29 85 14 113 34 0 0 65 0.93
146171--146287 27 4.3 28 70 24 81 47 0 0 52 1.00
146177--146285 14 7.4 15 70 15 59 45 0 0 54 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
159664--159718 25 2.2 26 90 3 85 43 5 3 47 1.44
171134--171180 16 2.8 17 83 6 60 42 0 0 57 0.98
171237--171338 37 2.7 37 76 18 104 50 2 2 44 1.32
201098--201190 3 28.7 3 72 20 55 65 0 0 34 0.93
201101--201190 31 3.3 29 80 17 95 65 0 0 34 0.93
201104--201182 14 5.8 14 75 19 78 64 0 0 35 0.94
201101--201155 17 3.4 17 85 14 89 63 0 0 36 0.95
235644--235750 30 3.5 31 76 10 114 55 0 0 44 0.99
235653--235707 28 2.0 28 86 10 78 52 0 0 47 1.00
235698--235750 24 2.3 24 78 9 58 56 0 0 43 0.99
274108--274148 16 2.5 17 88 7 59 12 36 9 41 1.76
284657--284690 10 3.4 10 87 0 50 41 0 29 29 1.57
284657--284691 15 2.3 15 95 0 61 40 0 31 28 1.57
342541--342597 24 2.4 24 97 2 107 15 31 12 40 1.85
342674--342706 8 4.1 8 92 0 57 39 33 0 27 1.57
347008--347051 22 2.0 22 100 0 88 22 18 18 40 1.91
364458--364490 16 1.9 18 88 11 52 15 24 9 51 1.72
377054--377099 15 3.1 15 81 15 51 45 8 32 13 1.73
380553--380595 17 2.6 16 75 7 50 34 16 0 48 1.46
391549--391597 23 2.1 23 100 0 98 28 18 16 36 1.92
394281--394334 22 2.4 22 81 6 63 50 0 0 50 1.00
394281--394336 16 3.6 16 80 9 71 48 0 0 51 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
432945--432974 15 2.1 14 93 6 51 13 26 20 40 1.89
439515--439557 21 2.0 21 95 0 77 37 9 16 37 1.81
444976--445033 22 2.7 22 76 10 66 48 0 0 51 1.00
444976--445062 14 6.1 14 74 9 68 41 0 0 58 0.98
444981--445075 23 3.8 25 72 20 74 42 0 0 57 0.98
452224--452266 16 2.6 16 81 3 50 16 20 46 16 1.84
474096--474125 15 2.0 15 93 0 51 23 33 10 33 1.88
484502--484527 13 2.0 13 100 0 52 30 23 7 38 1.83
554519--554578 3 20.0 3 79 6 68 33 35 31 0 1.58
554518--554578 24 2.5 24 89 10 106 34 34 31 0 1.58
571635--571679 18 2.4 19 81 7 56 44 0 0 55 0.99
571704--571750 14 3.2 14 77 16 51 46 0 0 53 1.00
571704--571759 16 3.1 19 78 19 66 46 0 0 53 1.00
579582--579649 18 3.3 22 76 21 67 55 0 8 35 1.31
579609--579650 18 2.3 19 95 4 77 59 0 7 33 1.25
582070--582096 12 2.2 12 100 0 54 40 0 0 59 0.98
591145--591304 42 3.6 45 74 13 143 56 0 0 43 0.99
591147--591302 14 10.8 14 65 21 56 57 0 0 42 0.99
591208--591308 16 6.2 16 72 13 64 55 0 0 44 0.99
595269--595300 16 2.0 16 93 0 55 46 0 0 53 1.00
595275--595431 14 10.8 14 65 20 56 42 0 0 57 0.98
595286--595333 16 3.0 16 76 8 53 35 0 0 64 0.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
595303--595427 42 2.9 43 76 13 123 44 0 0 56 0.99
595328--595432 27 3.4 32 77 17 98 45 0 0 54 0.99
595268--595433 46 3.8 45 71 15 114 43 0 0 56 0.99
595269--595434 45 3.7 47 71 19 140 43 0 0 56 0.99
609267--609293 8 3.4 8 100 0 54 62 0 0 37 0.95
613418--613471 27 1.9 29 85 7 76 18 22 42 16 1.89
624201--624260 19 3.3 19 73 13 54 58 0 0 41 0.98
624264--624296 10 3.3 10 87 12 50 30 0 0 69 0.88
630968--631029 30 2.1 30 100 0 124 16 27 40 16 1.89
648511--648585 41 1.9 40 86 13 111 60 1 0 38 1.06
648500--648604 45 2.5 41 79 11 115 57 0 0 41 1.05
659418--659452 18 1.9 18 88 0 52 54 34 11 0 1.37
662548--662592 20 2.3 19 92 7 81 40 15 11 33 1.83
663574--663617 22 2.0 22 82 8 54 11 0 11 77 1.00
668763--668867 24 4.4 24 70 13 74 33 0 0 64 1.06
668786--668992 6 31.1 7 68 23 85 39 1 0 58 1.14
668822--668935 16 7.4 14 70 19 52 38 0 0 60 1.03
668848--668935 37 2.2 38 73 15 81 40 0 1 57 1.06
668864--668940 8 10.1 8 69 23 51 45 0 0 54 0.99
668832--668944 20 5.8 20 73 16 96 39 0 0 59 1.04
668837--668962 20 6.3 21 70 18 83 39 0 1 58 1.07
668786--668995 10 20.0 11 62 23 62 39 1 0 58 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
668787--668995 14 14.6 14 67 18 56 39 1 0 57 1.14
668891--668992 20 5.3 19 80 11 84 41 1 0 55 1.17
673559--673596 16 2.4 16 83 12 51 36 28 10 23 1.88
677744--677863 56 2.1 56 100 0 240 42 20 20 16 1.89
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Tables: 1
The End!