123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042758
Parameters: 2 7 7 80 10 50 500
Length: 1101768
Tables: 1
This is table 1 of 1 ( 113 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2313--2348 18 2.0 18 88 0 54 41 25 25 8 1.83
35174--35255 28 2.9 28 83 3 101 21 25 23 29 1.99
68733--68766 17 1.9 18 88 5 52 17 8 38 35 1.81
70868--70962 35 2.7 35 100 0 190 30 33 32 3 1.74
71045--71103 26 2.3 26 100 0 118 28 22 32 16 1.96
71057--71120 26 2.5 26 89 0 92 32 21 23 21 1.98
71621--71659 17 2.3 17 100 0 78 28 12 28 30 1.93
76123--76173 16 3.2 16 83 2 59 7 29 15 47 1.74
76140--76169 15 1.9 16 93 6 53 0 30 13 56 1.37
76960--77008 24 2.0 24 84 0 62 28 28 18 24 1.98
77024--77082 23 2.7 23 80 19 72 40 15 28 15 1.87
77494--77527 15 2.3 15 94 0 59 32 35 5 26 1.81
151200--151235 18 2.0 18 94 0 63 38 16 13 30 1.88
152436--152476 21 2.0 21 85 0 55 24 29 19 26 1.98
166364--166404 19 2.2 19 87 12 59 4 36 7 51 1.51
180063--180101 17 2.3 17 100 0 78 28 12 28 30 1.93
180146--180195 23 2.2 23 100 0 100 46 14 18 22 1.84
193878--193903 6 4.3 6 100 0 52 19 46 19 15 1.85
194154--194178 13 1.9 13 100 0 50 64 32 0 4 1.12
199816--199901 43 2.0 43 95 0 154 22 26 19 31 1.98
208474--208644 31 4.6 36 66 22 111 40 18 16 25 1.90
208579--208644 31 2.1 31 100 0 132 39 18 13 28 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
242669--242793 24 5.2 24 94 0 205 34 5 31 28 1.80
260935--261065 68 1.9 67 83 11 169 30 22 27 19 1.98
291300--291336 19 1.9 19 100 0 74 16 27 10 45 1.80
299876--300014 69 2.0 69 83 5 174 25 20 24 29 1.99
303198--303267 31 2.3 31 97 0 131 27 25 14 32 1.94
303536--303569 17 2.0 17 100 0 68 29 29 11 29 1.92
309903--309941 17 2.3 17 100 0 78 30 28 12 28 1.93
310121--310161 22 1.9 21 90 5 64 29 29 7 34 1.84
310223--310290 29 2.3 29 100 0 136 29 10 25 35 1.89
329491--329543 18 3.1 17 76 13 54 24 13 37 24 1.91
338511--338544 17 2.0 17 94 0 59 38 0 44 17 1.49
339283--339309 3 9.0 3 100 0 54 66 0 0 33 0.92
359396--359449 24 2.2 24 100 0 108 31 20 40 7 1.80
367434--367483 20 2.6 20 87 6 77 48 10 26 16 1.77
388811--388840 15 2.0 15 100 0 60 40 20 20 20 1.92
389547--389706 72 2.2 72 96 0 293 23 28 30 17 1.97
397528--397564 12 3.2 12 77 14 51 21 29 8 40 1.82
406015--406043 14 2.1 14 100 0 58 27 6 20 44 1.77
408528--408643 58 2.0 58 100 0 232 18 29 25 25 1.98
417585--417624 20 2.1 19 90 4 62 40 17 32 10 1.83
417793--417839 24 2.0 24 87 8 69 59 4 19 17 1.53
425390--425414 9 2.8 9 100 0 50 0 60 0 40 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
431055--431096 22 1.9 22 95 0 75 19 26 23 30 1.98
440426--440477 27 1.9 27 92 0 86 21 38 7 32 1.82
467492--467527 18 2.0 18 94 0 63 30 33 2 33 1.72
475186--475345 5 32.0 5 88 0 194 31 0 20 48 1.50
475187--475345 15 10.6 15 91 1 221 30 0 20 48 1.50
479141--479186 22 2.1 22 95 0 83 30 17 32 19 1.95
479630--479718 33 2.7 33 94 0 160 26 15 23 33 1.95
485030--485156 21 5.9 21 85 2 164 47 14 5 32 1.68
485200--485290 33 2.8 33 95 4 161 41 23 18 16 1.90
486975--487005 6 5.2 6 100 0 62 35 16 32 16 1.91
488068--488206 69 2.0 69 83 5 174 25 20 24 29 1.99
503707--503754 25 1.9 25 95 0 87 29 37 8 25 1.85
536889--536937 25 2.0 25 95 0 89 34 0 42 22 1.54
541447--541472 13 2.0 13 100 0 52 15 23 15 46 1.83
542757--542815 19 3.3 19 67 26 56 23 11 13 50 1.74
542751--542822 34 2.1 34 97 0 135 27 9 15 47 1.77
543204--543233 15 2.0 15 93 0 51 13 23 13 50 1.77
568771--568807 19 1.9 19 94 0 65 24 35 13 27 1.93
572298--572323 13 2.0 13 100 0 52 23 30 30 15 1.95
574319--574354 15 2.3 17 86 13 51 11 16 22 50 1.77
580221--580266 24 1.9 24 100 0 92 41 13 8 36 1.75
584153--584179 13 2.1 13 100 0 54 14 14 0 70 1.17
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
594681--594740 5 12.0 5 92 0 93 35 0 20 45 1.51
601323--601362 21 1.9 21 94 0 71 32 17 10 40 1.83
604116--604161 23 1.9 24 91 8 76 21 17 36 23 1.94
606215--606240 13 2.0 13 100 0 52 15 15 23 46 1.83
632817--632854 20 1.9 19 94 5 67 0 34 0 65 0.93
635774--635834 12 4.8 12 73 15 52 37 24 9 27 1.87
640256--640290 5 7.0 5 100 0 70 60 0 20 20 1.37
660991--661058 36 1.9 36 84 3 93 23 14 25 36 1.93
661597--661636 20 2.0 20 85 9 55 45 17 20 17 1.86
666643--666690 24 2.0 24 95 0 87 52 4 31 12 1.58
692699--692858 72 2.2 72 96 0 293 23 28 30 17 1.97
699451--699516 18 3.4 18 69 25 53 36 13 21 28 1.91
700199--700233 18 1.9 18 94 0 61 45 8 14 31 1.75
717660--717713 24 2.2 24 90 0 90 18 22 12 46 1.83
720307--720352 23 2.1 22 84 8 58 41 15 15 28 1.87
754383--754424 21 2.0 21 100 0 84 14 19 9 57 1.64
764454--764503 25 2.0 25 96 0 91 28 10 26 36 1.88
764574--764607 17 2.0 17 88 0 50 41 14 20 23 1.89
778361--778401 19 2.2 19 86 8 57 7 36 24 31 1.83
799343--799426 30 2.8 30 90 0 123 27 34 16 21 1.95
799436--799516 39 2.1 39 100 0 162 33 34 17 14 1.90
800303--800330 13 2.2 13 100 0 56 39 14 0 46 1.44
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
805434--805466 16 2.0 17 94 5 59 51 0 12 36 1.39
824686--824728 21 2.2 19 83 8 50 16 32 9 41 1.80
837741--837828 39 2.2 40 90 8 144 25 26 20 28 1.99
844141--844169 11 2.7 11 94 5 51 6 34 10 48 1.64
844813--844849 17 2.2 17 90 0 56 43 5 35 16 1.71
856342--856373 13 2.5 13 94 0 55 25 6 50 18 1.70
865411--865534 53 2.3 56 90 6 193 29 28 15 26 1.96
865503--865536 17 2.0 17 100 0 68 29 29 11 29 1.92
897613--897637 9 2.8 9 100 0 50 40 0 60 0 0.97
899770--899879 52 2.1 52 98 0 211 25 27 9 38 1.86
908963--908990 12 2.3 12 100 0 56 32 42 17 7 1.77
912217--912260 22 2.0 22 90 0 70 38 22 15 22 1.92
929101--929137 11 3.5 11 78 14 51 45 16 16 21 1.84
929101--929138 20 1.9 20 100 0 76 47 15 15 21 1.82
936905--936947 6 7.2 6 100 0 86 67 0 16 16 1.24
948344--948426 39 2.1 39 82 8 98 9 30 7 53 1.61
961920--961965 5 9.2 5 100 0 92 60 0 19 19 1.36
984038--984127 32 2.8 32 100 0 180 23 33 25 17 1.96
990592--990622 15 2.1 15 93 0 53 22 25 22 29 1.99
997891--997915 12 2.1 12 100 0 50 16 24 24 36 1.94
1002952--1002995 17 2.6 17 85 0 61 36 27 9 27 1.87
1012448--1012473 12 2.2 12 100 0 52 34 15 34 15 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1045197--1045227 7 4.4 7 95 0 53 25 16 25 32 1.96
1051752--1051799 24 2.0 24 87 0 69 20 29 22 27 1.99
1093853--1093891 20 2.0 20 100 0 78 35 10 38 15 1.81
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Tables: 1
The End!