123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043914
Parameters: 2 7 7 80 10 50 500
Length: 707441
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
24521--24553 15 2.4 14 90 10 50 21 33 12 33 1.90
33421--33458 18 2.1 18 90 0 58 47 13 28 10 1.76
47055--47098 22 2.0 22 86 0 61 15 13 29 40 1.86
64616--64678 33 1.9 33 90 6 101 28 38 20 12 1.89
69653--69689 18 2.1 18 89 0 56 18 13 8 59 1.58
111540--111572 15 2.4 14 90 10 50 21 33 12 33 1.90
148415--148476 23 2.7 23 97 0 115 32 22 19 25 1.97
194823--194860 17 2.2 18 85 4 51 5 36 15 42 1.70
214575--214626 26 2.0 26 88 0 77 32 7 32 26 1.85
214890--214924 17 2.0 18 94 5 63 31 17 28 22 1.96
241152--241274 57 2.2 57 100 0 246 33 21 30 14 1.94
243404--243467 29 2.2 30 83 13 80 42 21 20 15 1.89
250437--250474 16 2.4 16 91 4 60 10 36 13 39 1.79
262705--262784 30 2.5 33 84 15 123 42 7 28 21 1.80
262722--262784 30 2.1 30 100 0 126 44 6 28 20 1.76
298779--298819 19 2.2 19 95 0 73 34 17 14 34 1.90
308011--308073 27 2.3 27 97 0 117 46 7 22 23 1.78
324066--324103 19 2.0 19 100 0 76 36 15 15 31 1.90
331187--331225 14 2.9 13 77 7 51 23 15 30 30 1.95
412960--413003 17 2.6 17 96 0 79 15 40 15 27 1.88
516688--516729 15 2.8 15 81 0 57 19 26 40 14 1.89
518515--518569 21 2.6 21 79 0 65 34 29 23 12 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
539275--539307 15 2.1 16 88 5 50 18 30 27 24 1.98
540799--540841 20 2.1 21 82 4 52 27 16 39 16 1.90
546469--546508 20 2.0 20 90 0 62 17 22 22 37 1.94
577466--577537 24 3.0 24 97 0 135 5 48 29 16 1.69
615941--615979 14 2.7 14 82 17 53 28 17 0 53 1.44
626105--626183 39 2.0 39 97 0 149 31 18 27 21 1.97
658094--658149 29 1.9 29 88 0 85 17 25 23 33 1.96
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Tables: 1
The End!