123.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_044768
    Parameters: 2 7 7 80 10 50 500
    Length:  389709

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  14853--14896                      22       2.0      22          86        8         63      47   4    18   29   1.68

  16481--16508                      14       2.0      14          100       0         56      28   14   14   42   1.84

  43588--43687                      26       3.8      26          100       0         200     39   8    31   22   1.83

  43829--43868                      21       2.0      20          90        5         62      42   25   10   22   1.84

  46764--46793                      2        15.0     2           92        0         51      50   0    3    46   1.18

  81773--81816                      18       2.4      19          84        3         54      31   4    38   25   1.76

  87863--87904                      21       2.0      21          100       0         84      4    19   23   52   1.65

  89284--89326                      18       2.4      18          81        18        54      34   25   20   18   1.96

  130809--130858                    25       2.0      25          88        0         73      14   26   20   40   1.90

  131080--131144                    30       2.2      30          85        0         94      21   36   15   26   1.93

  137666--137711                    22       2.0      23          87        4         67      17   23   15   43   1.87

  169505--169596                    47       2.0      46          85        6         123     41   21   10   26   1.86

  179238--179275                    19       2.0      19          94        0         67      34   23   26   15   1.95

  182994--183020                    14       1.9      14          100       0         54      25   22   14   37   1.93

  184241--184281                    18       2.4      17          84        8         55      17   19   19   43   1.88

  227806--227868                    21       3.0      21          95        0         117     28   26   15   28   1.96

  233137--233179                    18       2.6      16          82        10        52      25   32   20   20   1.97

  244183--244223                    20       2.0      22          85        9         59      14   26   9    48   1.75

  314711--314747                    17       2.2      17          90        0         56      45   16   5    32   1.70

  352842--352896                    17       3.0      19          79        15        62      34   3    23   38   1.73

  383121--383199                    39       2.0      39          95        0         140     32   18   26   21   1.97
  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!