123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059793
Parameters: 2 7 7 80 10 50 500
Length: 320439
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12844--12869 13 2.0 13 100 0 52 53 15 7 23 1.67
42154--42183 12 2.5 12 94 0 51 16 30 10 43 1.81
64951--65000 25 2.0 25 100 0 100 24 16 24 36 1.94
66578--66621 21 2.1 21 95 0 79 38 13 22 25 1.91
68233--68275 18 2.4 18 81 18 54 34 25 20 18 1.96
107070--107109 16 2.6 16 88 4 55 5 30 27 37 1.78
145599--145665 21 2.9 24 70 20 70 55 7 25 11 1.62
152667--152710 21 2.1 21 100 0 88 38 27 20 13 1.90
181877--181928 27 1.9 27 92 0 86 34 21 7 36 1.82
192632--192710 39 2.0 39 95 0 140 31 17 27 22 1.97
205751--205791 20 2.0 20 100 0 82 63 4 17 14 1.47
269813--269856 20 2.1 21 91 4 72 52 4 34 9 1.54
272092--272153 21 3.0 21 100 0 124 38 14 19 27 1.90
277793--277909 30 4.0 30 91 6 204 41 12 35 10 1.77
277793--277914 57 2.1 57 98 0 235 41 13 34 10 1.78
277941--277989 18 2.7 18 96 0 89 65 16 16 2 1.37
278558--278634 38 2.0 38 97 0 145 29 20 23 25 1.99
278570--278679 36 3.0 36 86 5 132 23 19 25 31 1.98
285818--285879 21 3.0 21 100 0 124 27 19 14 38 1.90
287529--287581 27 2.0 27 96 0 97 18 20 11 49 1.78
287654--287690 19 1.9 19 94 0 65 27 16 8 48 1.74
293167--293217 25 2.0 25 84 0 66 60 3 25 9 1.45
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
303080--303122 18 2.4 18 81 18 54 18 20 25 34 1.96
304734--304777 21 2.1 21 95 0 79 25 22 13 38 1.91
306355--306404 25 2.0 25 100 0 100 36 24 16 24 1.94
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Tables: 1
The End!