123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_064401
Parameters: 2 7 7 80 10 50 500
Length: 930306
Tables: 1
This is table 1 of 1 ( 59 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12416--12476 28 2.3 26 71 18 61 24 27 19 27 1.99
34496--34552 27 2.0 29 83 6 73 42 15 26 15 1.87
39328--39369 21 2.0 21 100 0 84 42 23 0 33 1.55
45977--46018 15 2.8 15 81 0 57 19 26 40 14 1.89
55684--55732 19 2.6 19 86 0 80 34 24 14 26 1.94
56133--56168 18 2.0 18 100 0 72 27 22 16 33 1.95
65814--65856 18 2.4 18 80 7 52 18 23 25 32 1.97
93210--93246 15 2.4 16 90 4 58 21 29 13 35 1.92
94936--94966 15 2.1 15 100 0 62 54 12 25 6 1.62
106212--106290 39 2.0 39 95 0 140 27 29 21 21 1.99
115119--115152 16 2.1 16 94 0 59 52 5 0 41 1.25
170145--170184 18 2.2 18 100 0 80 60 5 30 5 1.40
174724--174755 14 2.3 14 94 0 55 43 0 3 53 1.16
185670--185783 42 2.7 43 84 4 151 22 28 14 34 1.94
221406--221455 27 1.9 26 88 8 75 30 28 28 14 1.95
229971--230013 18 2.4 17 77 11 50 32 25 23 18 1.97
239659--239694 18 2.0 18 100 0 72 33 16 22 27 1.95
240098--240143 19 2.4 19 88 0 74 23 15 23 36 1.93
251881--251906 13 2.0 13 100 0 52 30 7 15 46 1.74
255671--255716 22 2.0 23 87 4 67 17 23 15 43 1.87
300599--300631 12 2.8 12 90 4 50 18 72 0 9 1.10
321603--321653 25 2.0 25 84 0 66 27 19 3 49 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
340189--340231 21 2.0 22 90 4 70 32 23 11 32 1.90
352248--352314 26 2.7 26 79 4 75 19 7 2 70 1.25
407957--407990 16 2.1 16 94 0 59 41 0 5 52 1.25
416819--416897 39 2.0 39 95 0 140 21 21 29 27 1.99
428143--428173 15 2.1 15 100 0 62 6 25 12 54 1.62
429800--429837 15 2.6 14 84 15 51 31 10 15 42 1.81
429863--429899 15 2.4 16 90 4 58 35 13 29 21 1.92
448181--448257 19 3.9 19 88 6 118 35 16 19 28 1.94
448181--448259 40 2.0 40 100 0 158 35 17 18 27 1.94
452645--452736 45 2.0 45 97 0 175 27 22 21 28 1.99
465407--465431 13 1.9 13 100 0 50 4 0 32 64 1.12
473100--473145 22 2.1 22 95 0 83 30 17 36 15 1.91
484050--484087 20 1.9 19 85 15 51 23 26 10 39 1.87
498187--498220 17 2.0 17 88 0 50 23 11 23 41 1.87
507295--507326 5 6.4 5 96 0 55 40 15 3 40 1.63
508252--508340 44 2.0 44 93 0 151 21 29 19 30 1.97
509497--509528 16 2.0 16 100 0 64 43 12 0 43 1.42
539637--539678 21 2.0 21 90 0 66 11 26 14 47 1.78
575279--575308 15 2.0 15 93 0 51 33 16 30 20 1.94
588192--588224 17 1.9 17 100 0 66 27 30 24 18 1.98
594249--594284 17 2.1 17 94 0 63 11 27 27 33 1.91
621817--621858 21 2.0 21 95 0 75 45 9 16 28 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
635991--636075 26 3.3 26 90 8 122 41 21 24 12 1.88
660424--660497 23 3.2 23 64 17 62 29 18 17 33 1.94
671926--672028 51 2.0 51 98 0 197 10 34 32 22 1.88
703793--703859 26 2.7 26 79 4 75 19 7 2 70 1.25
759502--759535 16 2.1 16 94 0 59 41 0 5 52 1.25
778827--778885 29 1.9 30 90 10 93 23 22 25 28 1.99
785465--785500 17 2.1 17 94 0 63 33 27 27 11 1.91
791525--791557 17 1.9 17 100 0 66 18 24 30 27 1.98
804441--804470 15 2.0 15 93 0 51 20 30 16 33 1.94
832711--832813 51 2.0 51 98 0 197 10 34 32 22 1.88
867073--867117 17 2.6 17 85 0 63 44 6 17 31 1.75
897371--897471 52 1.9 52 97 0 193 27 23 20 27 1.99
909282--909334 21 2.6 19 77 16 61 37 22 32 7 1.82
909574--909613 20 2.0 20 90 9 64 7 32 45 15 1.74
923424--923469 21 2.2 21 84 3 58 15 28 30 26 1.96
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Tables: 1
The End!