123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065232
Parameters: 2 7 7 80 10 50 500
Length: 535727
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3060--3102 18 2.4 18 81 18 54 18 20 25 34 1.96
4482--4523 21 2.0 21 100 0 84 52 23 19 4 1.65
31194--31233 21 2.0 20 90 5 62 42 25 10 22 1.84
68665--68707 17 2.5 17 84 0 59 32 6 16 44 1.74
136042--136176 30 4.5 30 100 0 270 12 37 12 37 1.81
151128--151173 22 2.0 23 87 4 67 17 23 15 43 1.87
161821--161875 17 3.0 19 79 15 62 34 3 23 38 1.73
180705--180783 39 2.0 39 95 0 140 21 26 18 32 1.97
225200--225227 14 2.0 14 100 0 56 42 14 14 28 1.84
289347--289431 22 3.5 22 71 20 80 28 24 29 17 1.97
324877--324914 20 1.9 20 89 10 60 23 10 34 31 1.89
327811--327840 14 2.1 14 93 0 51 20 20 13 46 1.83
331580--331621 21 2.0 21 100 0 84 42 23 0 33 1.55
339276--339318 18 2.4 18 81 18 54 18 20 25 34 1.96
340698--340739 21 2.0 21 100 0 84 52 23 19 4 1.65
359465--359528 30 2.1 30 88 0 92 26 15 37 20 1.92
359751--359800 25 2.0 25 88 0 73 40 20 26 14 1.90
363324--363370 22 2.2 21 85 11 60 4 23 4 68 1.26
393497--393558 30 2.1 30 100 0 124 33 9 32 24 1.88
410381--410438 18 3.2 17 80 9 62 46 20 15 17 1.84
411636--411662 14 1.9 14 100 0 54 37 14 22 25 1.93
415347--415384 19 2.0 19 94 0 67 15 26 23 34 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
417257--417326 36 1.9 36 91 5 115 12 32 35 18 1.89
421478--421525 21 2.3 21 88 0 69 10 18 18 52 1.74
441807--441841 17 2.1 17 94 0 61 25 20 22 31 1.98
482256--482318 21 3.0 21 100 0 126 28 28 14 28 1.95
487546--487588 18 2.6 16 82 10 52 25 32 20 20 1.97
490575--490677 31 3.3 31 100 0 206 11 40 11 35 1.78
532036--532075 20 2.0 20 100 0 80 20 40 15 25 1.90
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!