123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065237
Parameters: 2 7 7 80 10 50 500
Length: 302947
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
39480--39557 39 2.0 39 97 0 147 37 5 26 30 1.78
49356--49390 17 2.1 17 94 0 61 34 28 25 11 1.91
53080--53199 60 2.0 61 96 3 224 17 25 25 31 1.97
53101--53226 60 2.1 60 83 0 153 19 24 26 30 1.98
53306--53405 45 2.2 45 98 0 191 12 48 12 28 1.76
53306--53418 45 2.5 45 94 0 172 13 49 10 26 1.74
88503--88540 19 2.0 19 100 0 76 57 15 15 10 1.64
124352--124403 22 2.4 22 93 0 86 15 32 9 42 1.79
127846--127902 18 3.2 18 94 0 96 8 22 14 54 1.67
128571--128610 20 2.0 20 100 0 80 30 15 10 45 1.78
131795--131837 12 3.6 12 87 12 70 18 32 0 48 1.48
133883--133912 15 2.0 15 93 0 51 13 36 20 30 1.90
136298--136388 46 2.0 47 97 2 175 29 15 10 43 1.81
145192--145270 39 2.0 39 95 0 140 21 26 18 32 1.97
149842--149877 19 1.9 19 88 5 56 13 27 27 30 1.94
167601--167630 15 2.0 15 93 0 51 26 10 43 20 1.83
168582--168607 13 2.0 13 100 0 52 30 7 23 38 1.83
179783--179825 18 2.6 16 82 10 52 25 32 20 20 1.97
203791--203832 21 2.0 21 100 0 84 23 9 33 33 1.87
237117--237194 37 2.1 37 100 0 156 10 17 16 55 1.69
248069--248109 21 1.9 22 90 5 66 29 9 9 51 1.67
255610--255652 18 2.4 18 81 18 54 18 20 25 34 1.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
257325--257399 15 5.1 15 63 18 50 6 44 4 45 1.48
257313--257399 29 3.0 29 94 0 156 6 42 4 45 1.51
267108--267268 58 2.8 58 98 0 304 29 21 18 31 1.97
267974--267998 12 2.1 12 100 0 50 36 32 8 24 1.84
268196--268273 39 2.0 39 100 0 156 30 25 5 38 1.78
283841--283882 21 2.0 21 100 0 84 19 33 0 47 1.49
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Tables: 1
The End!