123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_069590
Parameters: 2 7 7 80 10 50 500
Length: 306009
Tables: 1
This is table 1 of 1 ( 15 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
18819--18858 20 2.0 20 85 0 53 20 17 10 52 1.72
51862--51940 39 2.0 39 95 0 140 31 17 27 22 1.97
75116--75155 16 2.6 16 88 4 55 5 30 27 37 1.78
88004--88055 27 1.9 27 92 0 86 36 7 21 34 1.82
101211--101253 18 2.4 18 81 18 54 18 20 25 34 1.96
104459--104508 25 2.0 25 96 0 91 34 26 16 24 1.95
154212--154253 21 2.0 21 100 0 84 42 14 14 28 1.84
172387--172433 15 3.3 15 76 8 53 48 17 29 4 1.65
176988--177033 22 2.3 20 82 17 60 47 4 13 34 1.62
225631--225693 32 2.0 32 100 0 126 26 9 19 44 1.81
254789--254831 18 2.4 18 81 18 54 18 20 25 34 1.96
258037--258086 25 2.0 25 96 0 91 34 26 16 24 1.95
266857--266897 21 2.0 21 95 0 73 12 29 14 43 1.82
269293--269336 20 2.1 21 91 4 72 9 34 4 52 1.54
299295--299335 21 2.0 21 95 0 73 12 29 14 43 1.82
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!