123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_077563
Parameters: 2 7 7 80 10 50 500
Length: 331440
Tables: 1
This is table 1 of 1 ( 11 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
23371--23412 18 2.3 18 95 0 75 35 16 16 30 1.92
54125--54150 12 2.2 12 100 0 52 7 30 0 61 1.24
100715--100748 2 18.0 2 88 11 54 50 0 0 50 1.00
100701--100752 18 2.9 19 94 5 83 50 0 0 50 1.00
100701--100756 20 2.7 22 84 15 84 50 0 0 50 1.00
126130--126161 16 2.0 16 100 0 64 25 31 0 43 1.55
185267--185299 18 1.9 18 88 11 52 36 15 21 27 1.93
193191--193246 26 2.2 25 84 15 71 19 12 21 46 1.83
257939--257980 18 2.3 18 80 19 52 19 19 26 35 1.95
264479--264644 69 2.4 69 94 0 287 36 13 18 32 1.89
314266--314293 14 2.0 14 100 0 56 28 7 14 50 1.69
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!