123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OX327714
Parameters: 2 7 7 80 10 50 500
Length: 661054
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
26702--26740 18 2.2 18 90 0 60 43 10 0 46 1.37
34634--34673 18 2.3 18 95 4 73 40 5 15 40 1.68
38027--38087 27 2.3 27 97 0 113 44 22 16 16 1.86
39171--39250 41 2.0 41 92 0 133 31 25 31 12 1.92
41514--41557 16 2.9 16 86 10 65 29 15 38 15 1.89
58792--58826 17 2.1 17 100 0 70 48 17 11 22 1.79
78410--78456 24 2.0 24 91 0 76 55 0 14 29 1.40
87715--87765 25 2.0 25 88 0 75 35 9 31 23 1.87
138891--138936 23 2.0 23 95 0 83 13 32 4 50 1.61
139916--139994 38 2.1 38 100 0 158 25 7 25 41 1.81
154162--154198 5 7.4 5 100 0 74 40 0 0 59 0.97
227781--227858 24 3.5 24 79 15 103 62 1 6 29 1.28
227790--227853 20 3.0 21 84 11 85 62 1 6 29 1.29
228025--228077 25 2.1 25 85 0 70 67 3 13 15 1.35
249470--249517 24 2.0 24 100 0 96 12 12 25 50 1.75
256276--256313 19 2.0 19 90 10 60 36 5 15 42 1.70
258110--258155 23 2.0 23 100 0 92 30 17 17 34 1.93
268031--268072 21 2.0 21 100 0 84 19 9 33 38 1.84
286864--286901 16 2.4 16 95 0 67 18 13 23 44 1.85
289029--289068 18 2.2 18 86 13 55 5 22 15 57 1.57
324555--324615 30 2.0 30 93 0 104 36 13 24 26 1.92
325095--325128 15 2.3 15 94 0 59 17 23 29 29 1.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
365194--365219 12 2.2 12 100 0 52 69 0 7 23 1.14
392011--392053 18 2.4 18 81 18 54 34 25 20 18 1.96
401048--401089 21 2.0 21 90 0 66 14 21 11 52 1.73
414884--414917 16 2.1 16 88 0 50 41 14 2 41 1.61
414878--414920 22 2.0 22 85 0 59 39 13 4 41 1.66
453466--453490 12 2.1 12 100 0 50 32 0 16 52 1.44
473096--473130 18 1.9 18 88 0 52 11 28 17 42 1.83
515611--515664 28 1.9 28 100 0 108 33 25 12 27 1.93
537989--538014 6 4.3 6 100 0 52 30 15 0 53 1.42
551941--551988 2 24.0 2 79 8 53 47 4 2 45 1.33
551955--551995 12 3.4 12 89 0 55 48 2 2 46 1.28
599447--599476 15 2.0 15 93 0 51 36 33 0 30 1.58
610980--611004 12 2.1 12 100 0 50 16 20 24 40 1.91
631970--632001 16 2.0 16 100 0 64 37 6 18 37 1.76
636314--636362 24 2.0 24 100 0 98 44 16 34 4 1.66
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Tables: 1
The End!