JN854162.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: JN854162.1 Pinus roxburghii isolate ROXB04 chloroplast, partial genome
    Parameters: 2 7 7 80 10 50 500
    Length:  120050

    Tables:   1   

    This is table  1  of  1  ( 22 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  14369--14402                       18       1.9      18          88        5         52      44   8    23   23   1.81

  16214--16245                       13       2.5      13          100       0         64      28   21   6    43   1.77

  19843--19872                       15       2.0      15          93        0         51      50   10   20   20   1.76

  27959--27991                       11       3.0      11          100       0         66      18   18   9    54   1.69

  30091--30128                       19       2.0      19          89        0         58      23   13   36   26   1.91

  31921--31997                       21       3.7      21          89        0         127     31   16   18   33   1.93

  40704--40737                       12       2.8      12          95        0         59      26   0    50   23   1.50

  42661--42690                       14       2.1      14          93        0         51      46   0    10   43   1.37

  44642--44682                       21       2.0      21          85        0         55      31   2    24   41   1.68

  47093--47117                       13       1.9      13          100       0         50      28   8    24   40   1.83

  68471--68502                       10       3.2      10          95        0         55      3    59   0    37   1.13

  70736--70783                       10       4.8      10          100       0         96      41   0    29   29   1.56

  73466--73492                       9        3.0      9           100       0         54      55   0    33   11   1.35

  74928--74961                       15       2.3      15          89        0         50      23   35   23   17   1.95

  95903--96013                       21       5.3      21          94        0         186     17   27   31   20   1.95

  99715--99789                       15       4.6      15          72        18        69      46   12   24   17   1.81

  99782--99845                       21       3.0      21          93        2         101     46   9    28   15   1.77

  99715--99821                       52       2.1      51          92        1         178     46   11   26   15   1.79

  99886--99930                       15       3.0      15          90        6         56      40   8    31   20   1.83

  115527--115567                     6        6.8      6           91        0         55      0    41   7    51   1.30

  115527--115567                     12       3.4      12          89        0         64      0    41   7    51   1.30

  115527--115567                     18       2.3      18          95        0         73      0    41   7    51   1.30
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!