123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: KY378710
Parameters: 2 7 7 80 10 50 500
Length: 127664
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4928--4957 14 2.1 14 100 0 60 60 6 6 26 1.47
5612--5660 14 3.7 14 78 15 50 51 16 6 26 1.68
5634--5661 14 2.0 14 100 0 56 50 14 14 21 1.78
6782--6811 15 2.0 15 100 0 60 26 6 13 53 1.64
9066--9100 15 2.2 16 85 15 54 40 5 5 48 1.51
9071--9100 15 2.0 15 100 0 60 40 6 6 46 1.56
10151--10193 14 2.9 15 87 12 63 44 11 4 39 1.62
14630--14659 15 2.0 15 93 0 51 16 16 13 53 1.73
15833--15869 19 1.9 19 94 0 65 40 13 5 40 1.67
27902--27947 22 2.1 22 84 15 60 60 6 4 28 1.40
29637--29676 20 2.0 20 100 0 80 30 25 10 35 1.88
30615--30640 13 2.0 13 100 0 52 61 0 23 15 1.33
30816--30850 11 3.0 12 91 8 63 48 25 8 17 1.75
31340--31368 14 2.1 14 100 0 58 31 27 0 41 1.56
32381--32406 13 2.0 13 100 0 52 53 0 7 38 1.30
40922--40950 15 1.9 15 100 0 58 17 27 34 20 1.95
43069--43114 20 2.3 20 96 0 83 52 13 4 30 1.59
51569--51610 18 2.2 18 87 8 57 33 2 7 57 1.39
61098--61129 15 2.1 15 100 0 64 43 12 0 43 1.42
68177--68217 21 2.0 21 95 0 73 29 21 12 36 1.90
72258--72309 19 3.0 17 81 13 61 19 5 7 67 1.36
81660--81685 13 2.0 13 100 0 52 15 23 0 61 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
82872--82920 24 2.0 24 92 0 80 38 8 4 48 1.52
89571--89625 24 2.5 22 85 8 67 14 23 12 49 1.78
89589--89659 21 3.5 20 77 7 79 11 21 8 59 1.58
91988--92027 18 2.2 18 95 0 71 32 7 25 35 1.84
99823--99867 23 2.0 23 86 0 63 20 11 6 62 1.50
110429--110467 17 2.3 17 100 0 78 71 0 10 17 1.12
114683--114720 18 2.1 18 100 0 76 10 15 0 73 1.09
119475--119499 11 2.3 11 100 0 50 48 0 16 36 1.46
123851--123883 15 2.1 16 88 5 50 12 6 6 75 1.16
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!