LC729560.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: LC729560.1 Operculina turpethum Chaw 1581 chloroplast DNA, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153970
Tables: 1
This is table 1 of 1 ( 59 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5746--5779 17 2.0 17 88 0 50 32 2 2 61 1.26
6728--6756 14 2.1 14 100 0 58 37 13 6 41 1.72
7887--7949 20 2.9 22 79 11 67 44 0 0 55 0.99
7909--7961 15 3.8 14 85 9 72 47 0 0 52 1.00
7876--7947 11 7.1 11 73 17 50 43 0 0 56 0.99
7909--7949 2 22.0 2 80 14 52 51 0 0 48 1.00
9541--9574 11 2.9 11 91 8 50 61 0 8 29 1.26
9678--9716 16 2.5 16 83 4 53 48 10 5 35 1.59
13086--13215 26 5.0 26 99 0 251 38 16 19 26 1.92
30504--30531 14 2.0 14 100 0 56 21 35 0 42 1.53
37652--37690 12 3.2 12 92 7 69 41 7 0 51 1.31
37655--37690 13 2.8 13 95 4 65 38 8 0 52 1.32
48160--48191 16 2.0 16 93 0 55 25 12 3 59 1.48
50604--50645 21 2.0 21 100 0 84 28 33 4 33 1.78
58712--58736 12 2.1 12 100 0 50 16 8 8 68 1.38
59354--59414 12 5.1 12 77 15 72 44 6 11 37 1.67
59348--59438 36 2.5 36 100 0 182 47 5 14 32 1.67
59402--59483 24 3.4 24 100 0 164 47 4 15 31 1.67
59375--59434 18 3.3 18 68 9 59 48 5 15 31 1.66
60586--60624 15 2.6 15 91 0 60 48 7 7 35 1.61
60885--60912 14 2.0 14 100 0 56 28 14 0 57 1.38
65235--65285 14 3.7 14 87 10 70 70 0 17 11 1.16
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
65240--65285 22 2.0 23 88 12 69 69 0 17 13 1.19
69841--69880 20 2.0 20 100 0 80 70 0 10 20 1.16
69914--69954 21 2.0 21 95 0 73 29 26 9 34 1.88
71099--71143 18 2.6 17 85 3 54 68 2 13 15 1.30
87771--87836 9 7.8 9 70 24 54 71 3 6 19 1.21
87771--87854 25 3.3 25 94 3 141 71 4 4 19 1.22
87779--87856 5 15.0 5 72 17 61 71 5 3 19 1.20
88931--88960 15 2.0 15 100 0 60 26 20 13 40 1.89
90353--90398 21 2.2 21 84 0 56 10 26 15 47 1.78
90362--90406 21 2.1 21 95 0 81 15 20 22 42 1.89
92618--92699 18 4.2 18 77 17 83 34 8 23 34 1.85
92636--92703 24 3.1 24 72 24 85 32 10 23 33 1.88
92611--92703 42 2.2 42 100 0 186 33 9 23 33 1.87
100494--100528 15 2.2 16 95 5 63 31 5 11 51 1.61
114272--114306 17 2.1 17 94 0 61 48 11 20 20 1.79
115023--115122 49 2.0 49 100 0 200 30 16 12 42 1.84
116177--116202 12 2.2 12 100 0 52 19 15 23 42 1.89
116335--116388 15 3.7 15 77 5 56 70 0 3 25 1.04
125856--126033 24 7.4 24 96 0 293 11 21 8 57 1.61
126345--126589 81 2.9 83 89 3 359 24 14 17 43 1.86
128839--128899 27 2.3 27 97 0 113 21 19 11 47 1.81
128865--129110 45 5.5 45 96 0 420 17 17 14 49 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128920--129083 21 7.4 21 67 18 100 17 15 15 51 1.77
130120--130175 21 2.7 21 94 0 94 8 21 3 66 1.35
130120--130183 12 5.8 12 72 22 52 9 20 4 65 1.39
140360--140394 15 2.2 16 95 5 63 51 11 5 31 1.61
140357--140399 21 2.0 21 82 8 52 51 11 6 30 1.65
148189--148272 18 4.3 18 73 16 78 33 23 9 33 1.87
148185--148277 42 2.2 42 100 0 186 33 23 9 33 1.87
148207--148276 24 3.2 24 69 23 80 34 21 8 35 1.84
150482--150526 21 2.1 21 95 0 81 42 22 20 15 1.89
151928--151957 15 2.0 15 100 0 60 40 13 20 26 1.89
153032--153109 5 15.0 5 72 17 61 19 3 5 71 1.20
153052--153117 9 7.8 9 70 24 54 19 6 3 71 1.21
153034--153117 25 3.3 25 94 3 141 19 4 4 71 1.22
153382--153410 15 1.9 15 100 0 58 41 0 6 51 1.28
153657--153691 17 2.1 16 89 5 52 40 2 0 57 1.14
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Tables: 1
The End!