MG678915.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MG678915.1 Pergularia daemia voucher OKLA:Fishbein 6130 chloroplast, partial genome
Parameters: 2 7 7 80 10 50 500
Length: 133407
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
88--112 12 2.1 12 100 0 50 16 8 0 76 1.02
181--248 29 2.3 30 82 12 88 39 1 1 57 1.17
245--277 14 2.4 14 95 5 59 30 6 0 63 1.18
4503--4554 13 4.1 13 80 5 52 63 13 5 17 1.48
4558--4582 12 2.1 12 100 0 50 48 16 16 20 1.82
6749--6781 16 2.1 16 100 0 66 63 6 12 18 1.48
7677--7708 16 2.0 16 100 0 64 37 6 12 43 1.68
7718--7756 15 2.6 15 100 0 78 58 7 5 28 1.47
7888--7920 15 2.2 15 100 0 66 33 6 6 54 1.50
9033--9068 18 2.0 18 100 0 72 55 0 11 33 1.35
14863--14889 12 2.2 12 100 0 54 25 14 7 51 1.68
32169--32206 19 2.0 19 100 0 76 26 21 5 47 1.71
32206--32236 11 2.7 11 95 5 53 38 0 16 45 1.47
35083--35126 16 2.9 15 93 6 79 52 11 0 36 1.38
37519--37548 11 2.8 11 95 5 53 40 6 6 46 1.56
37560--37592 12 2.7 13 90 9 52 45 12 0 42 1.41
38158--38189 16 2.0 16 93 0 55 46 0 12 40 1.42
42998--43037 20 2.0 20 95 0 71 40 7 30 22 1.81
48076--48105 15 2.0 15 93 0 51 36 6 16 40 1.75
48614--48643 14 2.1 14 93 0 51 50 6 16 26 1.70
48754--48793 20 2.0 20 85 9 55 47 15 2 35 1.58
49329--49357 14 2.1 14 100 0 58 55 6 0 37 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
57996--58047 7 7.6 7 79 18 56 42 1 7 48 1.43
57993--58041 12 4.3 12 75 15 59 42 2 6 48 1.39
57978--58041 33 2.1 30 83 13 78 43 3 7 45 1.48
63316--63360 13 3.2 13 84 9 54 37 0 0 55 1.00
63636--63712 19 3.8 19 91 8 118 27 0 20 51 1.47
63636--63712 42 1.9 41 89 10 124 27 0 20 51 1.47
64066--64131 34 2.0 33 100 0 123 30 10 9 48 1.69
73493--73525 9 3.5 10 88 12 52 60 0 0 39 0.97
73496--73529 15 2.3 15 90 10 52 61 0 0 38 0.96
74071--74112 19 2.2 19 83 8 50 71 0 2 26 0.98
74253--74328 3 23.3 3 74 15 62 27 3 0 68 1.07
74262--74329 27 2.6 26 95 4 127 26 2 0 70 1.01
74262--74330 7 10.4 7 83 10 92 27 2 0 69 1.02
74259--74334 20 3.8 20 84 6 93 27 3 0 68 1.07
76375--76419 15 3.0 15 81 12 65 62 0 6 31 1.21
76936--76979 24 2.0 22 86 13 63 29 31 13 25 1.94
86834--86880 18 2.6 18 100 0 94 17 27 10 44 1.81
88983--89024 21 2.0 21 100 0 84 47 4 9 38 1.57
89061--89092 16 2.0 16 100 0 64 62 0 12 25 1.30
93367--93408 14 3.0 14 96 0 75 30 7 19 42 1.78
93369--93413 14 3.2 14 93 0 72 35 4 15 44 1.67
113656--113718 31 2.0 31 93 0 108 42 20 9 26 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115365--115406 21 2.0 21 100 0 84 38 14 23 23 1.92
116173--116401 18 12.7 18 98 0 413 51 6 36 5 1.51
116396--116426 9 3.4 9 100 0 62 45 0 45 9 1.36
116816--117050 33 7.1 33 89 0 335 48 7 13 31 1.69
119324--119362 20 2.0 20 85 10 53 56 23 0 20 1.42
120828--120903 39 1.9 39 97 0 143 55 7 3 32 1.47
120890--120934 18 2.6 17 90 10 74 42 0 11 46 1.39
121408--121459 11 5.0 11 72 13 56 55 1 17 25 1.52
121418--121511 7 13.9 7 69 24 60 57 1 13 27 1.44
121401--121460 30 2.0 30 96 0 111 55 5 16 23 1.61
121418--121491 17 4.2 18 84 10 75 55 1 14 28 1.48
121432--121491 16 3.6 17 86 8 79 55 0 15 30 1.41
128326--128367 19 2.2 19 100 0 84 38 19 9 33 1.84
132461--132571 36 3.1 34 64 18 91 19 19 19 40 1.92
132402--132689 72 4.0 72 98 0 549 19 20 18 40 1.91
132691--133061 18 20.6 18 79 4 309 5 11 11 71 1.30
132703--133061 27 13.3 27 81 6 273 5 11 11 71 1.30
132694--133063 45 8.2 45 79 6 358 5 11 11 71 1.30
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Tables: 1
The End!