MH392274.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MH392274.1 Euphorbia kansui chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161061
Tables: 1
This is table 1 of 1 ( 100 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
335--391 12 5.0 12 73 16 50 28 8 3 59 1.44
313--406 33 2.9 33 93 3 156 29 8 6 55 1.55
447--518 13 5.7 12 88 8 90 38 2 1 56 1.22
438--518 26 3.3 25 85 11 98 38 2 1 58 1.20
498--615 48 2.5 48 95 2 213 34 7 1 55 1.38
498--632 48 2.9 48 90 6 179 35 6 2 55 1.38
917--947 15 2.1 15 100 0 62 54 0 12 32 1.38
1041--1078 17 2.2 17 95 0 67 39 7 10 42 1.69
5451--5488 13 2.8 13 92 4 58 26 10 0 63 1.27
5456--5497 14 3.1 14 90 10 61 26 11 0 61 1.30
5794--5822 15 2.0 15 93 6 51 48 0 6 44 1.29
6045--6092 12 4.5 11 80 12 55 66 0 2 31 1.03
6998--7023 12 2.2 12 100 0 52 42 7 0 50 1.31
7805--7835 15 2.1 15 100 0 62 12 12 0 74 1.08
8567--8596 15 2.0 15 93 0 51 63 3 0 33 1.11
9983--10065 17 5.3 15 73 13 62 31 12 2 54 1.50
11658--11703 15 3.0 15 84 15 51 26 15 4 54 1.59
11676--11707 15 2.1 15 100 0 64 28 12 0 59 1.34
11973--12015 16 2.7 16 92 0 68 32 4 13 48 1.63
12036--12086 20 2.7 20 93 6 88 19 15 3 60 1.50
15122--15152 16 1.9 16 100 0 62 25 9 12 51 1.70
16442--16476 16 2.2 16 89 0 52 42 2 25 28 1.69
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29573--29650 38 2.1 38 80 9 88 53 3 3 38 1.37
30100--30133 15 2.2 16 89 5 52 67 0 11 20 1.21
30100--30200 45 2.2 45 96 0 184 63 7 9 18 1.49
30145--30178 15 2.2 16 89 5 52 67 0 11 20 1.21
30633--30664 16 2.0 16 100 0 64 43 0 12 43 1.42
30669--30716 17 2.9 17 90 6 73 50 14 4 31 1.62
32597--32621 12 2.1 12 100 0 50 32 8 8 52 1.60
32987--33064 15 5.4 15 78 18 69 42 5 5 47 1.47
33088--33117 15 2.0 15 100 0 60 60 0 6 33 1.23
33656--33765 48 2.4 48 93 4 190 65 9 10 14 1.47
34333--34371 16 2.4 16 82 4 51 46 0 0 53 1.00
34380--34410 15 2.1 15 100 0 62 48 6 6 38 1.55
34813--34849 19 1.9 19 88 0 56 43 0 10 45 1.39
35028--35058 16 1.9 16 100 0 62 38 9 0 51 1.35
35177--35208 13 2.5 13 94 0 55 43 0 6 50 1.27
35828--35857 15 2.0 15 93 0 51 70 0 3 26 1.03
39963--40004 22 1.9 22 85 9 59 54 4 0 40 1.21
40164--40237 29 2.6 28 74 18 71 37 6 4 51 1.47
40267--40304 18 2.1 19 90 5 60 36 0 0 63 0.95
40264--40313 18 3.1 16 83 11 57 38 2 0 60 1.09
46440--46471 16 2.0 16 100 0 64 18 6 12 62 1.50
46532--46590 29 2.0 29 100 0 118 33 3 6 55 1.43
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46658--46709 20 2.6 19 75 16 52 30 0 5 63 1.18
46825--46885 15 4.1 15 97 0 113 60 6 11 21 1.53
51489--51553 18 3.7 18 73 19 64 21 7 0 70 1.11
52106--52143 19 2.0 19 100 0 76 52 15 5 26 1.64
52332--52373 14 3.0 14 100 0 84 28 0 21 50 1.49
52490--52514 12 2.1 12 100 0 50 60 0 16 24 1.36
52510--52546 15 2.4 15 90 4 56 43 0 16 40 1.48
54761--54823 20 3.2 20 72 4 56 33 6 4 55 1.46
54837--54891 14 4.1 14 82 17 80 36 12 0 50 1.41
54830--54892 26 2.5 26 92 7 103 38 11 1 49 1.48
54971--55005 16 2.1 18 89 10 56 54 8 14 22 1.67
63275--63384 55 2.0 55 100 0 220 30 18 16 34 1.93
63622--63686 21 3.1 21 93 4 105 60 0 7 32 1.25
63860--63897 14 2.8 14 96 4 69 36 7 0 55 1.29
63958--63988 14 2.2 14 94 0 53 61 3 6 29 1.37
64094--64152 13 4.5 13 79 12 59 66 5 0 28 1.13
64226--64367 60 2.4 60 77 9 134 58 3 7 30 1.43
64412--64471 25 2.4 25 83 2 77 70 3 10 16 1.29
67032--67126 41 2.3 42 80 12 106 34 10 2 52 1.48
68555--68608 26 2.1 26 100 0 108 62 7 11 18 1.50
69956--70452 270 1.8 270 100 0 994 32 17 16 33 1.92
71204--71231 14 2.0 14 100 0 56 35 7 7 50 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71218--71267 21 2.4 21 96 0 91 44 4 8 44 1.52
72099--72133 15 2.3 15 95 0 61 54 0 2 42 1.15
72415--72454 20 2.0 20 100 0 80 55 0 10 35 1.34
73936--73983 20 2.4 20 100 0 96 45 6 8 39 1.59
73965--74002 15 2.6 14 91 8 58 42 5 5 47 1.48
73909--74000 20 4.8 20 72 20 63 42 6 6 44 1.56
74062--74152 13 6.1 14 72 20 60 50 6 0 42 1.28
74065--74163 47 2.1 47 100 0 198 52 6 0 41 1.26
74075--74137 34 1.9 34 90 6 103 53 6 0 39 1.26
76236--76275 18 2.2 18 86 0 53 40 5 0 55 1.22
76230--76281 26 2.0 26 85 7 70 40 5 0 53 1.25
77207--77238 16 2.0 16 100 0 64 50 12 0 37 1.41
82811--82848 14 2.7 14 100 0 76 42 0 21 36 1.53
89079--89115 18 2.1 18 100 0 74 37 10 0 51 1.37
90503--90577 37 2.0 37 100 0 150 33 8 16 42 1.77
96044--96111 21 3.2 21 82 0 82 11 22 7 58 1.57
98467--98564 18 5.4 18 97 2 180 31 5 28 34 1.79
105909--105950 21 2.0 21 86 9 59 9 4 2 83 0.88
105923--105953 16 1.9 16 93 0 53 9 3 0 87 0.66
106437--106474 18 2.1 18 100 0 76 21 10 5 63 1.46
106791--106824 16 2.1 16 94 0 59 52 0 14 32 1.42
107185--107216 15 2.1 15 100 0 64 21 25 25 28 1.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116155--116181 13 2.1 13 100 0 54 22 14 0 62 1.31
117600--117753 76 2.0 76 100 0 308 61 6 7 24 1.48
120398--120423 13 2.0 13 100 0 52 15 7 0 76 0.99
127383--127458 34 2.2 34 95 0 134 19 25 10 44 1.82
127621--127646 13 2.0 13 100 0 52 15 15 7 61 1.55
136169--136195 13 2.1 13 100 0 54 62 0 14 22 1.31
145134--145165 15 2.1 15 100 0 64 28 25 25 21 1.99
145526--145559 16 2.1 16 94 0 59 32 14 0 52 1.42
145876--145913 18 2.1 18 100 0 76 63 5 10 21 1.46
146397--146427 16 1.9 16 93 0 53 87 0 3 9 0.66
153786--153883 18 5.4 18 97 2 180 34 28 5 31 1.79
156240--156328 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!