MH752592.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MH752592.1 UNVERIFIED: Periploca sepium chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 153513
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2590--2652 31 2.0 31 93 0 108 26 9 20 42 1.83
18452--18530 18 4.4 18 98 0 140 35 26 7 30 1.84
18452--18530 9 8.8 9 71 0 68 35 26 7 30 1.84
20847--20936 21 4.1 22 75 8 76 54 10 23 12 1.67
31900--31945 23 2.0 23 91 0 74 45 8 21 23 1.80
62373--62412 20 2.0 20 95 0 71 40 7 30 22 1.81
72390--72433 24 1.9 22 81 9 52 38 0 9 52 1.33
77631--77671 16 2.6 16 88 3 57 36 7 12 43 1.70
92102--92130 14 2.1 14 100 0 58 51 6 0 41 1.28
92689--92737 16 2.9 16 87 6 62 55 4 2 38 1.31
92872--92921 23 2.1 24 81 3 57 18 10 8 64 1.48
96753--96827 17 4.6 17 72 21 72 60 0 0 40 0.97
96754--96843 22 4.3 22 71 23 68 62 0 0 37 0.96
96756--96868 26 4.2 26 72 15 79 63 0 0 35 1.01
114401--114455 24 2.5 22 85 8 67 14 23 12 49 1.78
114423--114490 21 3.2 21 77 8 75 11 22 8 57 1.61
116807--116885 18 4.4 18 98 0 140 30 7 26 35 1.84
116807--116885 9 8.8 9 71 0 68 30 7 26 35 1.84
132685--132747 31 2.0 31 93 0 108 42 20 9 26 1.83
135410--135470 19 3.0 21 74 11 56 55 0 3 40 1.16
137098--137136 20 2.0 20 85 10 53 56 23 0 20 1.42
140672--140701 15 1.9 16 93 6 53 66 10 6 16 1.41
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145972--146012 17 2.5 16 84 4 55 19 2 2 75 1.03
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Tables: 1
The End!