MK303549.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MK303549.1 Artocarpus heterophyllus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160389
Tables: 1
This is table 1 of 1 ( 60 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4047--4078 15 2.1 15 100 0 64 40 9 0 50 1.35
4153--4178 13 2.0 13 100 0 52 30 23 15 30 1.95
4751--4809 16 3.8 16 72 18 61 33 6 0 59 1.24
4779--4809 16 1.9 16 100 0 62 35 6 0 58 1.24
6972--7021 13 3.9 13 73 21 52 62 6 0 32 1.20
6982--7030 24 2.0 24 100 0 98 63 4 0 32 1.13
6989--7033 13 3.6 13 72 22 51 64 2 0 33 1.06
9546--9590 18 2.5 18 81 0 54 15 6 2 75 1.11
9746--9771 12 2.2 12 100 0 52 26 7 0 65 1.20
10256--10282 13 2.1 13 100 0 54 22 7 7 62 1.46
30060--30101 15 2.7 16 81 7 50 28 7 7 57 1.52
31050--31088 13 3.0 13 85 10 53 10 5 2 82 0.93
31252--31279 12 2.3 12 100 0 56 17 0 7 75 1.03
33506--33561 27 2.0 28 82 3 69 51 1 1 44 1.22
33542--33586 19 2.4 18 89 10 65 44 2 2 51 1.26
39045--39082 11 3.2 12 88 11 60 55 0 0 44 0.99
39038--39093 25 2.3 24 78 9 60 53 0 1 44 1.11
39198--39257 24 2.4 24 86 10 77 60 0 8 31 1.27
39341--39372 16 2.0 16 93 0 55 56 3 3 37 1.31
45559--45615 17 3.4 17 82 7 80 59 1 1 36 1.18
47593--47628 17 2.1 18 94 5 65 69 2 0 27 1.02
48838--48887 25 2.0 25 96 0 91 40 0 38 22 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49640--49681 12 3.7 12 81 12 61 28 0 14 57 1.38
49641--49685 22 2.0 22 100 0 90 26 0 13 60 1.34
50081--50117 19 1.9 19 100 0 74 48 18 5 27 1.70
50468--50505 19 2.0 19 89 0 58 36 7 0 55 1.29
50494--50527 11 3.1 11 100 0 68 47 8 0 44 1.34
50480--50534 22 2.7 19 79 15 65 43 9 0 47 1.35
50854--50892 19 2.1 19 100 0 78 20 10 10 58 1.59
51050--51115 15 4.1 16 77 12 64 48 3 1 46 1.26
51053--51116 12 5.3 12 76 17 62 50 3 1 45 1.27
51878--51917 20 2.0 20 100 0 80 45 20 10 25 1.81
55002--55045 21 2.1 21 83 8 54 20 11 9 59 1.59
55402--55436 18 1.9 18 94 0 61 65 0 14 20 1.26
60839--60870 16 2.0 16 93 0 55 9 6 0 84 0.78
63419--63488 17 4.2 17 72 16 58 31 7 2 58 1.40
69998--70044 12 3.9 12 83 8 60 48 6 2 42 1.40
70057--70085 14 2.1 14 100 0 58 20 0 20 58 1.39
72628--72666 21 1.9 21 89 5 62 30 23 10 35 1.88
75086--75128 19 2.2 20 91 4 70 67 0 4 27 1.10
81650--81683 17 2.0 17 94 0 59 23 11 2 61 1.43
86575--86616 20 2.1 20 100 0 84 21 0 4 73 1.01
93915--93982 21 3.2 21 82 0 82 11 22 7 58 1.57
96323--96361 18 2.2 18 95 0 69 33 2 25 38 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
96323--96361 9 4.3 9 80 0 51 33 2 25 38 1.70
103714--103742 14 2.1 14 100 0 58 34 6 13 44 1.71
112198--112263 32 2.1 32 97 0 123 40 24 9 25 1.84
115757--115917 21 7.7 21 95 0 277 45 17 4 32 1.70
122024--122057 14 2.4 14 90 0 50 8 35 0 55 1.31
130119--130151 17 1.9 17 93 0 57 27 3 12 57 1.49
130723--130758 10 3.6 10 100 0 72 30 8 0 61 1.26
130753--130792 15 2.7 15 96 0 71 55 5 0 40 1.22
130773--130825 12 4.5 12 77 13 56 52 1 1 43 1.23
130865--130897 16 2.1 16 100 0 66 69 0 6 24 1.10
131189--131218 15 2.0 15 100 0 60 40 6 0 53 1.27
137204--137269 32 2.1 32 97 0 123 25 9 24 40 1.84
145725--145753 14 2.1 14 100 0 58 44 13 6 34 1.71
153107--153141 9 3.9 9 84 0 52 34 28 2 34 1.72
153106--153144 18 2.2 18 95 0 69 38 25 2 33 1.70
155486--155574 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!