MK577409.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MK577409.1 Asarum heterotropoides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159944
Tables: 1
This is table 1 of 1 ( 110 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
716--751 16 2.2 16 100 0 72 47 16 0 36 1.47
752--783 16 2.0 16 100 0 64 62 6 18 12 1.50
981--1044 10 6.5 10 73 10 51 28 21 0 50 1.49
993--1039 15 3.1 15 100 0 94 21 25 0 53 1.46
1031--1070 20 2.0 20 100 0 80 40 15 0 45 1.46
3034--3058 11 2.3 11 100 0 50 72 0 16 12 1.13
4121--4184 32 2.0 32 100 0 128 31 15 15 37 1.89
8784--8847 12 5.4 12 83 12 80 31 15 0 53 1.43
8788--8852 5 11.5 6 74 22 61 30 15 0 53 1.42
13133--13227 11 8.4 11 72 21 54 27 2 0 70 0.98
13133--13900 8 92.5 8 72 16 158 37 1 0 61 1.05
13163--13721 9 63.9 9 74 16 298 38 0 0 61 0.98
13225--13962 2 408.0 2 68 19 390 39 1 0 58 1.06
13133--13932 63 13.0 61 70 21 325 37 1 0 60 1.05
13794--13963 5 34.2 5 75 13 75 45 0 0 54 1.00
14694--14727 15 2.3 15 94 0 59 35 8 17 38 1.81
28287--28361 18 4.1 18 92 3 114 34 14 21 29 1.93
28478--28507 15 2.0 15 100 0 60 20 26 6 46 1.75
28585--28615 12 2.6 12 100 0 62 35 0 9 54 1.33
29897--29947 24 2.1 24 92 7 86 35 0 0 64 0.94
30593--30631 19 2.1 19 100 0 78 25 20 5 48 1.70
31299--31347 11 4.5 11 78 14 57 61 2 6 30 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
31294--31336 20 2.1 21 95 4 79 53 2 9 34 1.46
31664--31688 13 1.9 13 100 0 50 0 52 16 32 1.44
34108--34132 13 1.9 13 100 0 50 56 0 8 36 1.29
34125--34173 9 5.9 9 79 18 61 46 0 6 46 1.27
34125--34173 16 3.1 16 96 0 89 46 0 6 46 1.27
34167--34254 2 47.5 2 79 15 82 50 1 2 46 1.21
34167--34465 22 14.4 21 72 14 113 50 2 6 40 1.41
34234--34312 13 6.4 13 72 15 69 58 0 8 32 1.29
34236--34353 58 2.0 59 84 9 154 58 0 10 30 1.37
34360--34465 2 50.0 2 78 17 108 43 3 5 47 1.45
34360--34465 9 12.5 8 81 16 108 43 3 5 47 1.45
34366--34471 31 3.3 32 83 14 123 42 3 6 47 1.47
37492--37529 12 3.2 12 81 3 51 31 5 0 63 1.17
37491--37541 17 3.1 17 86 11 70 29 5 0 64 1.17
38399--38435 18 2.1 18 100 0 74 37 5 10 45 1.62
44129--44158 15 2.0 15 93 0 51 43 13 23 20 1.86
44215--44239 11 2.3 11 100 0 50 36 0 0 64 0.94
46333--46409 10 7.4 10 80 8 73 72 1 0 25 0.92
46345--46409 7 9.7 7 78 18 59 76 1 0 21 0.86
46345--46427 36 2.3 36 79 10 96 77 2 1 19 0.95
46351--46416 10 6.3 10 84 5 69 80 1 0 18 0.79
47211--47241 15 2.1 15 100 0 62 54 12 6 25 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48546--48590 8 5.1 8 82 17 54 48 0 26 24 1.51
48545--48586 19 2.2 19 100 0 84 47 0 23 28 1.52
48930--48967 19 2.0 19 100 0 76 31 10 10 47 1.72
48956--49011 11 5.5 11 74 21 50 46 0 7 46 1.30
48976--49057 6 13.3 6 79 16 80 45 1 3 50 1.27
48956--49063 30 3.8 29 80 15 111 45 0 5 48 1.32
48976--49056 13 6.0 13 80 13 101 44 1 3 50 1.27
49046--49108 31 2.0 31 81 6 74 52 0 7 39 1.31
49052--49108 12 5.1 12 87 12 70 52 0 8 38 1.33
49124--49150 12 2.2 12 100 0 54 33 0 7 59 1.25
49141--49176 18 2.0 18 100 0 72 38 0 16 44 1.48
49174--49204 16 1.9 16 93 0 53 48 12 3 35 1.58
49363--49387 11 2.3 11 100 0 50 36 0 0 64 0.94
49377--49425 8 6.2 8 73 21 50 30 4 0 65 1.11
49382--49448 16 4.7 15 82 14 72 31 2 0 65 1.07
49366--49475 25 4.3 24 78 15 89 36 1 0 61 1.06
49397--49475 27 3.0 25 83 10 79 36 1 0 62 1.04
49428--49478 7 7.7 7 77 18 56 45 0 0 54 0.99
49441--49485 20 2.3 21 88 11 69 48 0 0 51 1.00
49410--49478 13 5.4 12 84 8 75 40 0 0 59 0.97
49511--49545 17 2.1 17 100 0 70 42 5 5 45 1.51
49548--49586 19 2.1 19 100 0 78 35 0 23 41 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50337--50377 17 2.4 17 87 0 55 21 7 0 70 1.11
53670--53697 14 2.0 14 100 0 56 50 14 7 28 1.69
53727--53756 13 2.3 13 100 0 60 93 0 0 6 0.35
55491--55536 7 6.6 7 83 16 60 43 0 0 56 0.99
55492--55536 10 4.6 10 78 15 58 44 0 0 55 0.99
55495--55533 14 2.7 14 96 4 69 46 0 0 53 1.00
56319--56348 13 2.3 13 100 0 60 40 20 6 33 1.78
65005--65033 11 2.5 12 88 11 51 51 13 17 17 1.76
71862--71889 14 2.0 14 100 0 56 35 0 0 64 0.94
71883--71917 18 1.9 18 100 0 70 40 8 5 45 1.58
72771--72797 14 1.9 14 100 0 54 55 7 0 37 1.28
72762--72803 22 2.0 22 86 9 61 54 7 0 38 1.28
72894--72937 21 2.1 21 86 0 61 29 25 13 31 1.94
74097--74133 11 3.7 10 89 10 58 72 0 0 27 0.84
76991--77028 18 2.1 18 90 0 58 18 21 10 50 1.76
82783--82808 12 2.2 12 100 0 52 15 15 0 69 1.20
82805--82851 16 2.8 18 78 15 55 48 0 0 51 1.00
85563--85589 11 2.5 11 100 0 54 25 0 14 59 1.36
86757--86799 21 2.0 21 100 0 86 27 18 13 39 1.89
90828--90869 21 2.0 21 100 0 84 47 9 28 14 1.75
91412--91441 15 2.0 15 100 0 60 53 13 20 13 1.72
91757--91787 15 2.1 15 100 0 62 19 32 0 48 1.49
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94029--94138 21 5.1 21 93 4 168 13 24 10 51 1.71
95390--95444 27 2.0 27 100 0 110 20 21 18 40 1.92
104795--104831 19 1.9 19 100 0 74 18 16 0 64 1.29
104812--104839 13 2.2 13 100 0 56 25 14 0 60 1.34
114929--114958 15 2.0 15 100 0 60 53 20 13 13 1.72
116822--116851 2 15.5 2 93 6 53 53 0 0 46 1.00
117009--117033 12 2.1 12 100 0 50 52 0 24 24 1.48
122599--122692 8 10.7 9 72 24 60 31 0 0 68 0.90
122619--122689 15 4.7 15 70 25 60 32 0 0 67 0.91
122628--122692 3 22.3 3 74 25 52 32 0 0 67 0.91
122623--122719 37 2.5 38 78 14 99 34 0 3 62 1.11
122708--122749 19 2.2 19 100 0 84 47 4 9 38 1.57
132096--132124 6 4.8 6 100 0 58 17 0 31 51 1.45
133733--133762 15 2.0 15 100 0 60 13 13 20 53 1.72
143860--143896 19 1.9 19 100 0 74 64 0 16 18 1.29
143852--143879 13 2.2 13 100 0 56 60 0 14 25 1.34
152121--152163 18 2.6 16 85 10 52 34 25 6 32 1.83
153247--153301 27 2.0 27 100 0 110 40 18 21 20 1.92
154553--154662 21 5.1 21 93 4 168 51 10 24 13 1.71
156904--156934 15 2.1 15 100 0 62 48 0 32 19 1.49
157250--157279 15 2.0 15 100 0 60 13 20 13 53 1.72
157822--157863 21 2.0 21 100 0 84 14 28 9 47 1.75
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Tables: 1
The End!