MK609928.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MK609928.1 Glechoma longituba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153069
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6557--6595 19 2.1 19 100 0 78 30 5 0 64 1.15
6554--6595 11 3.8 11 81 9 50 30 4 0 64 1.14
6797--7028 112 2.1 112 100 0 464 31 12 12 43 1.79
7258--7298 20 2.0 20 100 0 82 29 14 4 51 1.63
8901--8938 18 2.1 18 95 0 67 47 15 18 18 1.83
13673--13883 105 2.0 105 100 0 422 35 23 14 27 1.93
16000--16262 130 2.0 130 100 0 526 38 16 12 33 1.86
28761--29029 133 2.0 133 100 0 538 28 19 15 35 1.93
29843--30079 117 2.0 117 100 0 474 37 9 16 35 1.81
31412--31619 103 2.0 103 100 0 416 35 15 17 31 1.91
32926--33154 112 2.0 112 100 0 458 28 17 21 32 1.96
40846--40874 15 1.9 15 100 0 58 13 37 34 13 1.85
49281--49446 83 2.0 83 100 0 332 21 20 15 42 1.89
59700--59731 16 2.0 16 100 0 64 25 18 18 37 1.94
59950--59981 16 2.0 16 100 0 64 25 18 18 37 1.94
59685--60184 250 2.0 250 100 0 1000 40 13 16 29 1.87
60258--60300 17 2.6 16 81 3 50 51 11 2 34 1.51
77228--77289 30 2.1 30 100 0 124 30 12 29 27 1.93
89440--89494 24 2.5 22 85 8 67 14 23 12 49 1.78
89462--89529 21 3.2 21 77 8 75 11 22 10 55 1.65
91846--91935 18 5.2 18 96 4 159 33 5 25 35 1.79
91858--91934 9 8.6 9 77 0 82 33 6 27 32 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99665--99714 11 4.5 11 82 12 59 32 2 18 48 1.59
99687--99738 17 3.0 17 97 2 95 28 0 23 48 1.51
99671--99738 34 2.0 34 86 11 95 29 1 22 47 1.60
103484--103517 17 2.0 17 100 0 68 70 0 17 11 1.16
107665--107725 31 2.0 31 90 0 95 40 21 11 26 1.87
108514--108662 74 2.0 74 100 0 298 27 22 22 26 1.99
112473--112625 74 2.1 74 100 0 306 30 13 3 52 1.57
114586--114613 14 2.0 14 100 0 56 57 7 0 35 1.26
117488--117520 16 2.1 16 100 0 66 36 6 6 51 1.51
118001--118507 250 2.0 250 99 0 1005 34 12 16 35 1.87
126058--126105 14 3.6 14 80 5 55 0 14 6 79 0.92
126051--126093 14 3.1 14 83 3 52 0 18 2 79 0.85
126051--126105 27 2.1 26 83 10 67 0 16 5 78 0.93
129182--129309 63 2.0 63 100 0 256 44 22 10 21 1.83
129973--130033 31 2.0 31 90 0 95 26 11 21 40 1.87
134181--134214 17 2.0 17 100 0 68 11 17 0 70 1.16
137988--138055 34 2.0 34 86 11 95 47 22 1 29 1.60
137988--138039 17 3.0 17 97 2 95 48 23 0 28 1.51
138043--138088 23 2.0 23 86 0 65 60 6 6 26 1.46
145760--145836 9 8.6 9 77 0 82 33 27 5 33 1.79
145760--145849 18 5.2 18 96 4 159 35 25 5 33 1.79
148184--148237 21 2.6 21 82 11 74 59 11 20 9 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148166--148255 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!