MK863371.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MK863371.1 Commelina communis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159644
Tables: 1
This is table 1 of 1 ( 82 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2311--2343 16 2.1 16 94 0 57 60 9 0 30 1.27
4344--4433 7 13.0 7 68 15 53 46 4 1 47 1.29
6705--6750 23 2.0 23 100 0 92 39 17 8 34 1.80
7260--7285 13 2.0 13 100 0 52 53 7 7 30 1.57
7584--7616 11 3.0 11 91 8 50 45 0 9 45 1.35
11105--11129 13 1.9 13 100 0 50 48 8 8 36 1.62
15680--15716 19 1.9 19 94 0 65 13 27 5 54 1.61
17014--17041 14 2.0 14 100 0 56 64 7 0 28 1.20
25362--25411 19 2.7 19 81 3 57 30 20 2 48 1.61
32074--32108 16 2.2 16 89 0 52 34 17 11 37 1.85
34892--34940 11 4.5 11 82 10 55 59 0 4 36 1.17
34863--34940 33 2.4 33 84 2 95 53 0 5 41 1.23
34889--34927 20 2.0 20 89 0 60 58 0 0 41 0.98
39192--39222 16 1.9 16 93 0 53 38 6 9 45 1.63
39341--39391 14 3.6 14 75 17 52 45 0 0 54 0.99
39351--39389 19 2.1 19 85 9 53 43 0 0 56 0.99
39391--39416 13 2.0 13 100 0 52 23 7 7 61 1.49
39479--39506 14 2.0 14 100 0 56 50 0 14 35 1.43
50061--50123 20 3.2 19 82 15 74 47 1 6 44 1.38
50958--50993 18 2.0 18 94 0 63 44 19 0 36 1.51
51076--51100 13 1.9 13 100 0 50 36 0 0 64 0.94
51072--51120 17 2.9 17 82 11 57 34 0 2 63 1.06
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51197--51237 20 2.0 21 85 4 57 56 2 12 29 1.49
54414--54479 9 7.9 8 80 13 55 54 1 0 43 1.09
54416--54462 15 3.0 16 93 6 78 51 2 0 46 1.13
56566--56614 25 2.0 25 88 8 73 42 2 0 55 1.11
56567--56622 12 4.6 12 76 10 51 44 1 0 53 1.11
61155--61181 13 2.1 13 100 0 54 51 0 14 33 1.43
61185--61216 15 2.1 15 94 0 55 21 9 0 68 1.17
61358--61415 28 2.0 28 83 9 73 37 1 0 60 1.07
61380--61414 14 2.5 15 86 13 56 37 0 0 62 0.95
61435--61470 17 2.1 17 89 0 54 36 2 2 58 1.27
63241--63269 14 2.1 14 100 0 58 34 0 0 65 0.93
63588--63631 20 2.1 22 91 8 74 56 4 9 29 1.50
70340--70381 17 2.5 17 80 3 50 47 9 2 40 1.49
71009--71073 19 3.4 19 79 10 62 47 1 4 46 1.32
71495--71542 14 3.4 14 88 0 69 43 12 4 39 1.62
75240--75279 20 2.0 20 95 0 71 22 5 2 70 1.19
75329--75369 17 2.5 16 84 7 55 43 4 0 51 1.23
75381--75419 19 2.1 19 90 0 60 38 7 0 53 1.30
75387--75439 19 2.8 18 82 5 61 33 11 0 54 1.36
75482--75617 64 2.1 65 80 9 154 44 1 0 53 1.14
75516--75569 16 3.3 16 78 12 56 48 1 0 50 1.11
75562--75598 13 2.7 14 88 12 51 35 0 0 64 0.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
75635--75673 19 2.0 21 85 10 55 46 0 0 53 1.00
75882--75918 19 1.9 19 88 0 56 45 2 8 43 1.47
82352--82391 20 2.0 20 100 0 80 45 10 10 35 1.71
86628--86668 20 2.0 20 100 0 82 24 0 0 75 0.80
86631--86666 17 2.1 18 89 5 56 25 0 0 75 0.81
91207--91248 21 2.0 21 95 0 75 23 14 26 35 1.93
93527--93551 12 2.1 12 100 0 50 40 8 0 52 1.31
93585--93663 21 3.8 21 98 0 149 15 29 10 45 1.78
104000--104035 18 2.1 18 89 5 56 25 11 2 61 1.43
104074--104183 18 5.6 19 74 20 75 36 1 9 52 1.44
104128--104217 35 2.3 38 76 19 80 36 1 10 52 1.42
104096--104195 44 2.3 44 100 0 200 37 2 9 52 1.45
104160--104218 26 2.3 26 80 14 68 35 0 13 50 1.42
113660--113707 21 2.3 21 100 0 96 16 39 12 31 1.86
117407--117444 16 2.4 16 95 0 67 42 0 0 57 0.98
117527--117574 24 1.9 26 83 8 64 27 6 10 56 1.57
117629--117690 26 2.3 28 88 8 101 35 0 3 61 1.12
118357--118382 12 2.2 12 100 0 52 50 0 0 50 1.00
119062--119107 15 2.9 16 83 3 58 52 8 0 39 1.33
119153--119193 16 2.9 14 83 16 57 39 2 7 51 1.43
120398--120433 17 2.1 17 94 0 63 41 5 8 44 1.58
122588--122618 14 2.2 14 94 0 53 45 3 0 51 1.17
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
122595--122669 16 4.7 16 71 17 57 44 1 4 50 1.29
122641--122678 17 2.3 17 86 4 51 39 0 2 57 1.12
123271--123311 14 2.9 14 92 3 64 21 2 4 70 1.18
124033--124079 15 3.1 15 93 0 76 51 0 2 46 1.13
129106--129137 13 2.4 13 94 5 55 56 6 3 34 1.40
129133--129164 16 2.0 16 100 0 64 75 0 6 18 1.01
134791--134838 21 2.3 21 100 0 96 31 12 39 16 1.86
144278--144367 9 10.2 9 67 21 57 53 11 1 34 1.44
144303--144402 44 2.3 44 100 0 200 52 9 2 37 1.45
144308--144428 44 3.1 37 82 16 113 54 8 2 34 1.44
144315--144424 18 5.6 19 74 20 75 52 9 1 36 1.44
144272--144461 79 2.3 81 76 14 187 52 11 3 33 1.54
144463--144498 18 2.1 18 89 5 56 61 2 11 25 1.43
154835--154913 21 3.8 21 98 0 149 45 10 29 15 1.78
154947--154971 12 2.1 12 100 0 50 52 0 8 40 1.31
157250--157291 21 2.0 21 95 0 75 35 26 14 23 1.93
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Tables: 1
The End!