MK940823.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MK940823.1 Alpinia officinarum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162140
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3504--3543 20 2.0 20 100 0 80 25 10 10 55 1.64
4855--4887 16 2.1 16 100 0 66 51 12 0 36 1.39
6020--6052 16 2.1 16 94 5 59 45 6 0 48 1.27
6560--6606 16 2.9 16 87 3 58 42 4 0 53 1.20
6611--6650 20 2.0 20 95 0 71 37 5 17 40 1.72
8443--8467 13 1.9 13 100 0 50 72 12 0 16 1.13
14871--14909 14 2.6 14 92 8 60 53 12 0 33 1.39
14912--14952 17 2.4 17 79 0 55 58 0 0 41 0.98
14981--15006 12 2.2 12 100 0 52 69 0 0 30 0.89
30497--30542 23 2.0 23 100 0 92 8 17 13 60 1.56
31429--31460 16 2.0 16 100 0 64 43 12 12 31 1.80
32256--32287 15 2.1 15 100 0 64 21 6 12 59 1.55
32353--32408 29 1.9 29 92 0 94 46 12 19 21 1.83
34591--34625 17 2.0 18 94 5 63 51 0 8 40 1.33
48209--48242 17 2.0 17 100 0 68 35 5 0 58 1.22
48289--48319 15 2.1 15 93 0 53 16 6 6 70 1.29
48539--48569 13 2.5 13 94 5 55 48 29 0 22 1.51
62245--62271 12 2.2 12 100 0 54 40 0 0 59 0.98
62311--62347 15 2.4 15 90 4 56 35 2 0 62 1.10
68101--68156 20 3.1 18 80 10 60 51 3 5 39 1.42
71044--71108 21 3.1 21 90 0 103 33 24 9 32 1.87
78484--78546 2 32.0 2 75 15 60 52 1 3 42 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
78475--78530 26 2.2 26 83 6 69 51 5 1 41 1.35
78484--78546 14 4.4 14 83 2 72 52 1 3 42 1.27
82650--82698 24 2.0 24 92 0 80 28 32 12 26 1.92
89974--90069 50 1.9 50 97 0 183 42 17 9 30 1.81
92628--92710 21 3.8 21 93 4 130 14 26 10 48 1.77
93948--93990 21 2.0 21 90 0 68 32 9 25 32 1.88
98196--98239 22 2.0 22 100 0 88 59 13 9 18 1.60
103693--103782 23 3.9 23 98 0 171 41 8 4 45 1.55
114913--114954 21 2.0 21 90 0 66 52 7 26 14 1.67
120396--120421 12 2.2 12 100 0 52 50 0 0 50 1.00
124619--124810 2 102.0 2 68 24 89 43 4 3 48 1.39
124619--124811 26 7.9 25 69 24 110 43 4 3 48 1.39
124817--124878 18 3.6 17 81 12 74 25 1 0 72 0.94
124802--124883 9 9.1 9 73 23 57 25 4 1 68 1.17
134454--134495 21 2.0 21 90 0 66 14 26 7 52 1.67
145626--145715 23 3.9 23 98 0 171 45 4 8 41 1.55
151169--151212 22 2.0 22 100 0 88 18 9 13 59 1.60
155418--155460 21 2.0 21 90 0 68 32 25 9 32 1.88
156698--156780 21 3.8 21 93 4 130 48 10 26 14 1.77
159339--159434 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!