MK943805.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MK943805.1 UNVERIFIED: Oplopanax horridus voucher Taylor s.n. chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 156205
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7050--7074 13 1.9 13 100 0 50 24 20 24 32 1.98
8824--8861 19 2.0 19 85 10 51 39 0 26 34 1.57
9500--9529 14 2.1 14 100 0 60 80 0 13 6 0.91
10872--10936 16 4.1 16 100 0 130 43 12 6 38 1.67
32912--32942 15 2.1 15 93 0 53 38 6 0 54 1.26
44548--44578 15 2.0 16 93 6 55 64 6 0 29 1.18
59301--59357 30 1.9 30 92 0 96 28 7 12 52 1.64
63938--63965 14 2.0 14 100 0 56 42 14 7 35 1.73
69342--69374 17 1.9 17 88 11 50 0 33 0 66 0.92
70083--70123 21 2.0 21 95 0 73 29 26 9 34 1.88
70312--70354 21 2.0 21 100 0 86 58 4 9 27 1.49
76328--76365 19 2.0 19 100 0 76 52 15 10 21 1.72
77274--77309 17 2.1 17 100 0 72 61 5 16 16 1.53
86384--86418 17 2.1 17 100 0 70 11 28 0 60 1.32
91814--91843 15 2.0 15 100 0 60 53 6 26 13 1.64
92981--93055 18 4.2 18 98 0 132 30 8 26 34 1.85
92981--93042 9 6.9 9 73 0 61 30 6 27 35 1.82
105538--105574 15 2.5 15 100 0 74 27 24 16 32 1.96
128270--128323 24 2.3 24 81 12 67 18 3 14 62 1.46
136924--136960 15 2.5 15 100 0 74 32 16 24 27 1.96
149443--149517 18 4.2 18 98 0 132 34 26 8 30 1.85
149456--149517 9 6.9 9 73 0 61 35 27 6 30 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150655--150684 15 2.0 15 100 0 60 13 26 6 53 1.64
156080--156114 17 2.1 17 100 0 70 60 0 28 11 1.32
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Tables: 1
The End!