MN055629.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN055629.1 Rumex crispus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158851
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4534--4574 20 2.0 20 100 0 82 19 4 9 65 1.40
5451--5513 31 2.0 31 100 0 126 50 19 7 22 1.72
6348--6391 21 2.1 21 100 0 88 29 13 0 56 1.38
8862--8898 17 2.2 17 100 0 74 10 16 0 72 1.10
20327--20379 26 2.0 26 100 0 106 15 26 11 47 1.79
27837--27864 14 2.0 14 100 0 56 7 7 14 71 1.29
35550--35602 15 3.4 15 71 19 54 43 9 3 43 1.55
35546--35609 32 2.0 32 100 0 128 40 12 3 43 1.58
35550--35602 17 3.2 17 66 28 51 43 9 3 43 1.55
47035--47059 11 2.3 11 100 0 50 36 0 8 56 1.29
48364--48419 18 3.3 17 73 22 55 53 5 0 41 1.24
51746--51772 12 2.2 12 100 0 54 37 14 0 48 1.45
52891--52935 22 2.0 22 100 0 90 73 4 13 8 1.23
54913--54998 42 2.0 42 100 0 172 58 0 4 37 1.19
64157--64300 24 6.0 24 100 0 288 54 8 12 25 1.65
69476--69502 12 2.2 12 100 0 54 48 0 0 51 1.00
90765--90808 21 2.1 21 91 0 70 36 15 20 27 1.93
94982--95017 17 2.1 17 100 0 72 30 22 5 41 1.76
99572--99599 14 2.0 14 100 0 56 28 14 21 35 1.92
109503--109563 26 2.5 24 84 7 70 63 0 8 27 1.22
109496--109564 20 3.6 19 80 17 72 62 0 8 28 1.25
109585--109641 26 2.2 26 81 12 64 52 5 10 31 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110381--110444 21 3.0 21 90 0 92 28 10 26 34 1.90
111450--111502 12 4.5 11 81 13 61 47 7 28 16 1.74
111442--111502 24 2.5 24 83 0 77 45 6 29 18 1.74
125809--125849 7 6.0 7 83 16 59 46 0 0 53 1.00
125810--125852 12 3.2 13 81 18 61 48 0 0 51 1.00
125809--125852 15 3.1 15 84 15 67 47 0 0 52 1.00
127879--127915 18 2.1 18 100 0 74 24 10 10 54 1.67
128316--128348 16 2.1 16 100 0 66 45 12 0 42 1.41
132450--132502 12 4.4 12 85 0 70 20 30 5 43 1.75
132442--132494 24 2.2 24 86 6 72 16 28 7 47 1.74
132442--132502 24 2.5 24 84 5 70 18 29 6 45 1.74
133500--133563 21 3.0 21 90 0 92 34 26 10 28 1.90
133601--133652 21 2.5 21 87 3 70 40 11 17 30 1.85
134302--134359 26 2.2 26 79 11 66 32 10 5 51 1.58
134380--134448 20 3.6 19 80 17 72 28 8 0 62 1.25
144376--144406 12 2.5 13 94 5 55 74 6 9 9 1.23
149027--149062 17 2.1 17 100 0 72 41 5 22 30 1.76
153236--153279 21 2.1 21 91 0 70 27 20 15 36 1.93
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Tables: 1
The End!