MN199129.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN199129.1 Gentiana lutea voucher AFCH18001 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150466
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4967--4996 12 2.6 12 94 5 53 30 10 0 60 1.30
7677--7702 13 2.0 13 100 0 52 23 23 7 46 1.78
14096--14123 14 2.0 14 100 0 56 35 14 7 42 1.73
25799--25826 14 2.0 14 100 0 56 28 14 7 50 1.69
26301--26327 13 2.1 13 100 0 54 48 14 0 37 1.45
29908--29955 24 2.0 24 91 0 78 50 0 14 35 1.44
30249--30278 13 2.2 14 94 5 53 30 6 10 53 1.60
34040--34069 15 2.0 15 100 0 60 46 0 26 26 1.53
46570--46599 15 2.0 15 100 0 60 20 13 6 60 1.55
49526--49565 21 1.9 21 89 0 62 50 2 5 42 1.37
66657--66686 15 2.0 15 100 0 60 13 40 20 26 1.89
70418--70464 23 2.0 23 100 0 94 31 25 8 34 1.86
83912--83937 8 3.2 8 100 0 52 38 11 11 38 1.78
84084--84121 20 1.9 20 88 0 58 39 10 21 28 1.86
89108--89147 18 2.2 18 95 0 71 32 7 25 35 1.84
91845--91896 25 2.1 25 100 0 104 48 11 19 21 1.80
104879--104941 31 2.0 31 87 0 90 42 23 9 23 1.83
104959--104985 9 3.0 9 100 0 54 11 33 0 55 1.35
120266--120293 14 2.0 14 100 0 56 28 7 28 35 1.84
123414--123457 12 3.4 13 84 15 56 4 13 6 75 1.17
127297--127323 9 3.0 9 100 0 54 55 0 33 11 1.35
127341--127403 31 2.0 31 87 0 90 23 9 23 42 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140386--140437 25 2.1 25 100 0 104 21 19 11 48 1.80
143135--143174 18 2.2 18 95 0 71 35 25 7 32 1.84
148161--148198 20 1.9 20 88 0 58 28 21 10 39 1.86
148345--148370 8 3.2 8 100 0 52 38 11 11 38 1.78
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Tables: 1
The End!