MN614130.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN614130.1 UNVERIFIED: Cistanche tubulosa chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 75375
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
261--302 10 4.3 10 75 6 50 33 0 7 59 1.25
254--291 19 2.1 19 90 9 62 39 0 5 55 1.23
522--557 16 2.2 16 100 0 72 44 16 19 19 1.87
6191--6228 19 2.0 19 100 0 76 31 5 15 47 1.68
12078--12113 17 2.1 17 100 0 72 27 11 16 44 1.82
14222--14251 14 2.1 14 100 0 60 66 6 0 26 1.16
14596--14625 15 2.0 15 100 0 60 20 13 13 53 1.72
15191--15224 16 2.1 16 100 0 68 44 5 17 32 1.73
17336--17371 18 2.0 18 100 0 72 38 0 11 50 1.38
18335--18491 39 4.0 39 94 0 269 42 14 16 26 1.87
20646--20692 12 4.1 12 75 10 53 34 10 6 48 1.63
21890--21949 27 2.3 27 80 5 70 53 1 1 43 1.20
23348--23388 21 2.0 21 90 0 64 29 29 9 31 1.89
25902--25935 16 2.1 16 100 0 68 17 26 14 41 1.88
32283--32405 48 2.6 48 100 0 246 21 28 6 43 1.77
32435--32469 16 2.2 16 100 0 70 31 0 5 62 1.18
32435--32485 26 2.0 26 88 0 75 29 0 5 64 1.17
32486--32557 11 6.4 11 74 6 54 51 1 9 37 1.44
32489--32529 16 2.6 16 92 0 64 56 0 12 31 1.36
32500--32544 22 2.1 21 87 4 63 53 2 11 33 1.49
33739--33766 14 2.0 14 100 0 56 14 14 21 50 1.78
34361--34397 18 2.1 18 100 0 74 24 16 27 32 1.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
37550--37607 29 2.0 29 100 0 116 41 0 10 48 1.37
37550--37615 29 2.4 27 90 7 98 40 0 10 48 1.38
39246--39278 13 2.6 13 85 4 50 51 0 9 39 1.34
39231--39271 18 2.3 18 87 4 57 48 4 9 36 1.58
42355--42404 21 2.4 21 100 0 100 12 14 14 60 1.60
44731--44819 9 9.6 9 73 24 78 33 1 24 40 1.63
44745--44796 15 3.3 15 75 19 52 32 1 23 42 1.65
44734--44818 21 3.9 22 80 11 86 34 1 24 40 1.63
45894--45951 18 3.2 18 100 0 116 25 0 48 25 1.52
45934--46018 27 2.9 28 87 10 102 35 1 44 18 1.58
45961--46018 27 2.1 27 100 0 116 41 0 44 13 1.44
48134--48162 7 4.3 7 91 8 51 27 0 0 72 0.85
48132--48160 13 2.2 13 100 0 58 24 0 0 75 0.80
56452--56489 4 10.0 4 88 11 62 52 0 23 23 1.47
61176--61206 12 2.6 12 94 0 53 54 0 0 45 0.99
61175--61246 27 2.9 24 78 11 74 45 2 2 48 1.31
63536--63571 18 2.0 18 88 0 54 41 0 22 36 1.54
67591--67627 18 2.1 18 94 0 65 37 5 18 37 1.74
70231--70296 29 2.4 26 83 13 96 48 10 0 40 1.38
70239--70296 29 2.0 29 100 0 116 48 10 0 41 1.37
73449--73485 18 2.1 18 100 0 74 32 27 16 24 1.96
74080--74107 14 2.0 14 100 0 56 50 21 14 14 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
75302--75346 22 2.1 21 87 4 63 33 11 2 53 1.49
75317--75357 16 2.6 16 92 0 64 31 12 0 56 1.36
75289--75360 11 6.4 11 74 6 54 37 9 1 51 1.44
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Tables: 1
The End!