MN652612.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN652612.1 Prunus jamasakura voucher Sun1704033 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157905
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
119--154 18 2.0 18 100 0 72 27 11 11 50 1.72
4803--4828 13 2.0 13 100 0 52 46 7 0 46 1.31
8855--8885 15 2.1 15 93 0 53 41 6 16 35 1.74
9667--9716 10 5.0 10 76 23 52 54 2 0 44 1.11
13023--13056 17 2.0 17 100 0 68 41 11 17 29 1.85
13708--13751 17 2.6 18 82 10 56 56 0 4 38 1.20
20970--20999 15 2.0 15 93 0 51 33 13 23 30 1.93
27540--27567 13 2.2 13 100 0 56 39 0 21 39 1.54
28688--28723 17 2.1 17 94 0 63 30 5 2 61 1.33
37707--37734 9 3.1 9 100 0 56 42 0 14 42 1.45
48054--48094 13 3.2 12 86 10 55 68 0 2 29 1.03
48661--48686 13 2.0 13 100 0 52 46 0 23 30 1.53
51252--51283 16 2.0 16 100 0 64 18 12 12 56 1.67
52582--52615 11 3.2 11 91 4 52 41 0 11 47 1.40
52763--52906 2 77.5 2 67 21 55 54 2 3 38 1.32
52763--52901 7 19.6 7 73 14 70 55 2 2 38 1.30
52832--52896 32 2.0 32 85 5 87 56 1 1 40 1.18
58192--58241 25 2.0 25 100 0 100 40 16 16 28 1.89
60419--60444 13 2.0 13 100 0 52 53 7 15 23 1.67
65356--65382 13 2.1 13 100 0 54 37 7 29 25 1.83
67314--67348 17 2.1 17 94 0 61 37 5 8 48 1.58
71531--71581 21 2.4 21 100 0 102 49 0 13 37 1.43
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71569--71605 15 2.5 15 95 0 65 56 0 5 37 1.22
76193--76228 18 2.0 18 100 0 72 38 5 11 44 1.63
90925--90992 21 3.2 21 82 0 82 11 22 7 58 1.57
93344--93395 18 2.9 18 94 0 95 32 7 28 30 1.85
96370--96420 17 3.1 16 78 16 59 52 7 0 39 1.30
96375--96412 16 2.5 16 87 8 53 50 5 0 44 1.24
100927--100952 12 2.2 12 100 0 52 7 7 0 84 0.77
109651--109714 31 2.1 31 93 0 110 40 25 7 26 1.82
115798--115843 19 2.3 20 78 17 60 60 0 0 39 0.97
116123--116203 23 3.6 23 86 3 110 48 0 1 50 1.08
116125--116194 13 5.9 13 75 21 82 50 0 1 48 1.09
116130--116193 22 2.8 23 97 2 121 51 0 1 46 1.10
116413--116449 18 2.1 17 95 5 65 56 5 2 35 1.36
116721--116745 12 2.1 12 100 0 50 68 0 8 24 1.16
121922--121948 12 2.2 12 100 0 54 40 0 14 44 1.46
130130--130163 15 2.3 15 94 0 59 0 20 5 73 1.04
134102--134165 31 2.1 31 93 0 110 26 7 25 40 1.82
142864--142889 12 2.2 12 100 0 52 84 0 7 7 0.77
147398--147448 17 3.1 18 75 16 56 41 0 7 50 1.31
147404--147448 16 2.8 16 83 6 56 44 0 6 48 1.29
147404--147458 15 3.6 16 78 9 62 47 0 5 47 1.25
150421--150472 18 2.9 18 94 0 95 30 28 7 32 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152825--152913 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!