MN727386.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN727386.1 Tinospora sinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158688
Tables: 1
This is table 1 of 1 ( 66 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13715--13787 30 2.4 29 74 14 67 20 0 2 76 0.90
13714--13780 20 3.2 20 78 15 71 17 0 2 79 0.86
13729--13783 14 3.9 14 76 23 53 20 0 3 76 0.94
13736--13792 24 2.4 24 79 5 62 24 0 3 71 1.01
20445--20476 15 2.1 15 100 0 64 46 12 0 40 1.42
28096--28143 23 2.1 23 96 0 87 35 6 18 39 1.76
30456--30520 20 3.2 20 70 22 55 30 6 6 56 1.48
30481--30522 12 3.4 12 86 3 57 30 2 7 59 1.37
30563--30599 7 5.3 7 87 12 58 40 0 0 59 0.97
30563--30608 19 2.3 21 85 14 62 39 2 0 58 1.10
30566--30609 17 2.6 17 80 16 56 38 2 0 59 1.10
32244--32287 14 3.3 14 75 12 56 25 15 0 59 1.37
32244--32295 26 2.0 26 100 0 104 23 15 0 61 1.33
33146--33184 18 2.2 17 90 4 60 38 17 0 43 1.50
33144--33185 6 6.8 6 81 13 50 38 16 0 45 1.48
33181--33262 10 7.7 10 73 16 58 39 2 3 54 1.31
33234--33275 15 2.8 15 82 13 59 47 0 2 50 1.14
33317--33389 16 4.2 18 76 20 66 23 4 0 72 1.01
33346--33402 28 2.0 28 86 6 80 33 1 0 64 1.04
33314--33392 28 2.7 28 82 7 86 25 3 0 70 1.03
33641--33668 14 2.0 14 100 0 56 50 0 14 35 1.43
39055--39126 18 3.7 18 71 20 56 45 2 0 51 1.15
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
39083--39229 28 5.2 27 69 20 72 42 2 2 52 1.30
39136--39220 30 2.7 29 80 14 73 41 1 2 55 1.20
39049--39223 13 14.1 13 65 24 51 42 1 2 53 1.23
39161--39230 37 1.9 36 82 8 88 44 1 2 51 1.25
39226--39279 29 1.9 29 88 7 85 57 9 3 29 1.47
39947--39982 18 2.0 18 100 0 72 50 11 22 16 1.77
47909--47938 15 2.0 15 93 0 51 40 20 10 30 1.85
50059--50117 29 2.0 30 96 3 111 52 16 3 27 1.60
50344--50402 31 1.9 31 82 6 75 38 6 0 54 1.27
50326--50378 25 2.1 25 100 0 106 41 7 0 50 1.30
50375--50417 18 2.3 18 96 4 77 39 2 0 58 1.11
50395--50463 28 2.5 27 75 11 68 46 0 1 52 1.09
50509--50567 22 2.9 19 86 13 91 40 5 22 32 1.75
52263--52305 17 2.5 18 81 11 54 60 0 20 18 1.36
54858--54895 18 2.1 18 100 0 76 34 15 5 44 1.69
55870--55898 14 2.1 14 100 0 58 51 27 13 6 1.66
63157--63187 14 2.2 14 100 0 62 29 12 0 58 1.35
63185--63226 17 2.5 17 84 7 50 16 4 2 76 1.07
63221--63248 14 2.0 14 100 0 56 35 0 14 50 1.43
63298--63329 16 2.0 16 93 0 55 43 9 6 40 1.62
68799--68837 19 2.1 19 100 0 78 30 25 0 43 1.55
70879--70921 19 2.3 19 95 0 77 53 0 11 34 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71744--71777 17 2.0 17 100 0 68 47 11 11 29 1.76
71950--71978 14 2.0 15 93 6 51 55 6 13 24 1.63
72835--72881 15 3.1 15 93 0 85 12 19 2 65 1.35
74040--74065 13 2.0 13 100 0 52 23 15 23 38 1.92
82172--82202 16 1.9 16 100 0 62 32 6 29 32 1.83
87134--87167 17 2.0 17 88 0 50 47 0 23 29 1.52
87856--87888 15 2.3 14 94 5 57 21 51 0 27 1.48
88787--88823 18 2.1 18 100 0 74 29 21 0 48 1.50
90894--90923 15 2.0 15 93 0 51 43 13 30 13 1.82
91148--91195 24 2.0 24 95 0 87 31 8 27 33 1.86
93546--93602 21 2.7 21 97 0 105 10 24 14 50 1.73
95992--96043 18 3.1 18 86 8 74 30 5 25 38 1.79
113163--113204 19 2.2 19 86 0 57 42 11 9 35 1.74
116087--116132 20 2.2 20 80 3 56 67 2 2 28 1.14
121411--121471 22 2.8 22 92 5 97 39 18 4 37 1.72
124935--124976 16 2.5 17 92 7 77 71 0 0 28 0.86
130849--130912 33 1.9 33 83 0 83 21 17 9 51 1.73
151282--151333 18 3.1 18 86 8 74 38 25 5 30 1.79
153723--153779 21 2.7 21 97 0 105 50 14 24 10 1.73
156130--156177 24 2.0 24 95 0 87 33 27 8 31 1.86
156402--156431 15 2.0 15 93 0 51 13 30 13 43 1.82
158502--158538 18 2.1 18 100 0 74 48 0 21 29 1.50
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Tables: 1
The End!