MN854377.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN854377.1 Centella asiatica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154771
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
20916--20945 15 2.0 15 93 0 51 33 13 23 30 1.93
29617--29669 26 2.0 26 100 0 106 30 7 7 54 1.56
29756--29788 17 1.9 17 93 0 57 30 21 3 45 1.67
31752--31783 15 2.1 15 100 0 64 53 6 0 40 1.26
31756--31789 15 2.3 15 89 0 50 61 5 0 32 1.20
32250--32292 19 2.3 19 91 0 68 39 6 13 39 1.72
32258--32298 19 2.2 19 100 0 82 31 9 14 43 1.78
45024--45048 12 2.1 12 100 0 50 52 8 0 40 1.31
45824--45856 17 1.9 17 93 0 57 69 0 9 21 1.15
55980--56032 25 2.1 25 89 0 79 60 1 9 28 1.38
69907--69946 21 1.9 21 94 0 71 30 27 10 32 1.89
76245--76282 19 2.0 19 100 0 76 52 15 10 21 1.72
76296--76320 12 2.1 12 100 0 50 32 24 0 44 1.54
82139--82168 15 2.0 15 93 0 51 33 13 10 43 1.77
91349--91393 15 3.0 15 96 0 81 26 33 15 24 1.95
92640--92669 15 2.0 15 93 0 51 30 10 20 40 1.85
92652--92747 18 5.3 18 91 2 131 29 9 29 32 1.88
92653--92747 36 2.6 36 88 3 147 29 8 29 32 1.87
110332--110362 15 2.1 15 100 0 62 19 12 0 67 1.22
111060--111102 21 2.0 21 100 0 86 30 13 23 32 1.93
114325--114372 14 3.6 14 72 11 55 43 0 18 37 1.51
114317--114368 26 2.0 26 100 0 104 38 0 19 42 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114367--114406 13 3.1 13 100 0 80 62 0 15 22 1.32
124605--124629 12 2.1 12 100 0 50 92 0 0 8 0.40
127230--127269 21 1.9 21 85 10 55 20 15 0 65 1.28
128131--128194 27 2.4 27 78 5 76 1 28 7 62 1.32
129846--129888 21 2.0 21 100 0 86 32 23 13 30 1.93
130586--130616 15 2.1 15 100 0 62 67 0 12 19 1.22
130592--130630 21 1.9 20 84 5 51 66 2 20 10 1.33
148216--148277 9 6.9 9 71 0 52 32 32 4 30 1.79
148201--148295 18 5.3 18 91 2 138 32 29 8 29 1.87
148265--148308 15 2.7 16 86 10 54 38 20 11 29 1.87
149555--149599 15 3.0 15 96 0 81 24 15 33 26 1.95
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Tables: 1
The End!