MN871983.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN871983.1 Potentilla chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157117
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
272--307 15 2.4 15 95 0 63 47 0 13 38 1.44
1718--1742 12 2.1 12 100 0 50 44 8 0 48 1.32
7229--7355 2 69.0 2 69 23 66 44 0 3 51 1.23
7240--7293 15 3.7 15 88 11 85 38 0 1 59 1.08
7692--7736 23 2.0 22 95 4 81 44 6 8 40 1.62
8684--8713 15 2.0 15 100 0 60 46 26 0 26 1.53
9888--10063 87 2.0 87 100 0 352 46 4 7 40 1.53
10365--10532 74 2.3 74 94 2 293 45 7 5 41 1.56
10626--10668 20 2.4 17 85 14 52 46 4 11 37 1.61
10622--10661 20 2.0 20 100 0 80 45 5 15 35 1.68
13041--13074 17 2.0 17 94 0 59 20 14 11 52 1.73
13220--13252 17 1.9 17 100 0 66 36 15 12 36 1.84
14019--14061 11 4.0 11 93 6 79 18 9 9 62 1.51
14019--14062 21 2.1 21 100 0 88 20 9 9 61 1.53
28152--28181 15 2.0 15 100 0 60 20 13 13 53 1.72
28327--28353 14 1.9 14 100 0 54 14 7 3 74 1.18
29039--29073 16 2.2 17 90 10 56 71 5 11 11 1.30
29408--29439 16 2.0 16 93 0 55 25 18 9 46 1.79
30719--30768 19 2.6 19 96 0 91 40 0 0 60 0.97
30719--30769 10 5.3 10 88 9 79 39 0 0 60 0.97
30723--30775 10 5.5 10 88 6 56 35 0 0 64 0.94
31467--31588 59 2.1 59 100 0 244 20 20 9 49 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32086--32110 12 2.1 12 100 0 50 36 8 8 48 1.62
32750--32818 16 4.2 17 76 9 72 53 0 7 39 1.29
32757--32821 32 2.0 32 100 0 130 52 0 9 38 1.34
33204--33234 15 2.1 15 100 0 62 25 6 0 67 1.14
33396--33425 13 2.3 13 100 0 60 46 6 0 46 1.29
44518--44656 68 2.0 68 100 0 278 33 10 10 46 1.72
47468--47525 29 2.0 29 100 0 116 55 6 20 17 1.65
47571--47609 13 3.1 12 88 7 51 43 0 7 48 1.31
47966--48194 113 2.0 113 100 0 458 38 7 2 50 1.45
48657--48690 17 1.9 18 94 5 61 52 5 0 41 1.25
49221--49249 14 2.1 14 100 0 58 31 13 20 34 1.92
51263--51301 15 2.5 16 95 4 71 20 15 10 53 1.70
52914--52951 18 2.1 18 95 0 67 57 5 0 36 1.21
56483--56584 46 2.2 46 98 0 195 37 13 8 40 1.76
56715--56740 13 2.0 13 100 0 52 38 0 15 46 1.46
58863--58921 31 1.9 31 100 0 118 28 11 8 50 1.68
60635--60727 28 3.2 27 68 24 80 55 4 0 39 1.19
60670--60792 17 7.5 17 69 28 72 52 1 1 43 1.20
60649--60768 26 4.1 29 76 20 126 53 2 0 44 1.14
60638--60764 61 2.1 61 100 0 254 53 3 0 43 1.16
60638--60792 61 2.5 61 92 4 240 53 2 1 42 1.22
65633--65658 13 2.0 13 100 0 52 46 0 7 46 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67055--67089 17 2.1 17 94 0 61 37 5 8 48 1.58
67200--67239 20 2.0 20 95 0 71 25 12 5 57 1.55
69404--69515 54 2.1 54 100 0 224 29 19 23 27 1.98
76234--76269 18 2.0 18 94 0 63 36 5 13 44 1.68
76560--76594 14 2.4 14 85 4 52 45 2 8 42 1.49
76955--76994 20 2.0 20 100 0 80 25 10 15 50 1.74
85373--85399 13 2.1 13 100 0 54 7 22 0 70 1.12
90948--91035 21 3.9 24 72 18 80 12 22 7 56 1.61
90970--91037 21 3.2 21 82 0 82 11 22 7 58 1.57
93404--93440 18 2.1 18 94 0 65 32 5 24 37 1.78
96035--96101 33 2.0 34 97 2 127 35 20 14 28 1.93
109804--109865 32 1.9 32 93 0 106 38 22 11 27 1.88
112349--112479 64 2.0 64 100 0 262 45 9 7 38 1.65
116240--116272 11 2.8 12 86 13 50 69 3 6 21 1.24
117624--117657 10 3.2 10 84 15 50 38 8 8 44 1.67
117625--117659 12 3.1 12 92 8 56 34 8 8 48 1.64
120487--120512 12 2.2 12 100 0 52 53 15 0 30 1.42
121221--121300 38 2.1 38 97 2 153 37 8 25 28 1.86
122867--122905 17 2.4 17 83 8 55 41 0 5 53 1.23
122896--122927 16 2.0 16 93 0 55 65 0 0 34 0.93
126069--126100 16 2.0 16 93 0 55 31 0 15 53 1.43
126686--126726 17 2.5 17 92 4 66 51 9 9 29 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
126694--126730 17 2.2 17 100 0 74 56 10 5 27 1.55
127376--127479 51 2.0 51 100 0 208 37 7 15 39 1.76
133609--133670 32 1.9 32 93 0 106 27 11 22 38 1.88
149853--149889 18 2.1 18 94 0 65 37 24 5 32 1.78
152257--152345 21 4.1 21 81 5 81 57 7 22 12 1.61
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Tables: 1
The End!