MN885668.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN885668.1 Pyrrosia lingua chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160568
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
25897--25936 14 2.7 14 92 7 62 87 0 10 2 0.63
25897--25936 15 2.6 15 88 11 55 87 0 10 2 0.63
25902--25936 17 2.1 17 88 0 52 88 0 8 2 0.61
48254--48278 13 1.9 13 100 0 50 92 0 8 0 0.40
48256--48281 12 2.2 12 100 0 52 92 0 7 0 0.39
48255--48284 15 2.0 15 93 0 51 90 0 10 0 0.47
58446--58529 9 9.3 9 81 0 96 23 11 27 36 1.90
59911--59953 9 4.8 9 86 11 52 27 30 18 23 1.98
59985--60043 9 6.6 9 100 0 118 32 32 11 23 1.91
59974--60031 27 2.1 27 87 0 80 37 27 13 20 1.91
61757--61806 15 3.3 15 85 0 64 24 16 32 28 1.96
64071--64099 15 1.9 15 100 0 58 27 13 20 37 1.91
83439--83475 13 2.8 13 91 0 56 51 10 10 27 1.70
94703--94731 14 2.1 14 100 0 58 20 20 44 13 1.85
106447--106496 24 2.1 24 88 0 73 44 14 16 26 1.85
111389--111424 18 2.0 18 88 0 54 27 16 38 16 1.90
111900--111933 17 1.9 18 88 5 52 50 26 8 14 1.72
115882--115926 10 4.5 10 91 0 72 51 0 17 31 1.46
115879--115920 14 3.0 14 89 0 57 50 0 16 33 1.46
115884--115924 14 2.9 14 92 0 64 51 0 19 29 1.47
134074--134109 18 2.0 18 88 0 54 16 38 16 27 1.90
139002--139051 24 2.1 24 88 0 73 26 16 14 44 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150767--150795 14 2.1 14 100 0 58 13 44 20 20 1.85
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Tables: 1
The End!