MT130705.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT130705.1 Aristolochia bracteolata voucher SUPG017 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158234
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1929--1987 18 3.1 18 73 9 55 35 0 0 64 0.94
1927--1988 33 1.9 34 84 12 87 33 0 0 66 0.92
2006--2065 22 2.6 22 73 5 57 55 0 0 45 0.99
4437--4601 2 90.5 2 70 17 65 57 1 0 40 1.14
4399--4601 11 19.1 11 67 19 101 57 1 0 40 1.12
4398--4606 25 8.1 27 70 17 99 57 1 0 40 1.11
4552--4604 20 2.8 20 85 5 74 62 0 0 37 0.96
6685--6709 1 25.0 1 100 0 50 100 0 0 0 0.00
13289--13323 17 2.1 17 100 0 70 54 5 22 17 1.64
13594--13624 16 1.9 16 100 0 62 45 9 19 25 1.81
14334--14391 4 15.0 4 77 16 52 74 0 0 25 0.82
30747--30791 21 2.1 21 88 8 65 55 8 4 31 1.51
31469--31498 15 2.0 15 100 0 60 33 20 6 40 1.78
31637--31661 11 2.3 11 100 0 50 92 0 8 0 0.40
33641--33671 8 3.9 8 91 0 53 35 3 12 48 1.58
34833--34862 15 2.0 15 100 0 60 40 13 13 33 1.83
35094--35137 22 2.0 22 95 0 79 43 4 15 36 1.68
38962--38993 17 1.9 17 93 6 57 34 25 15 25 1.95
47020--47098 11 7.0 11 79 13 74 49 6 0 44 1.28
47016--47096 16 5.2 16 76 5 85 49 7 0 43 1.30
47015--47109 46 2.1 46 100 0 190 53 6 0 40 1.26
54047--54104 17 3.6 18 82 15 65 58 0 5 36 1.20
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54378--54411 17 2.0 17 88 0 50 55 14 11 17 1.68
62506--62546 9 4.8 9 80 19 52 46 7 0 46 1.30
71562--71603 15 3.0 15 90 10 63 76 0 0 23 0.79
71776--71820 21 2.1 21 91 0 72 31 22 13 33 1.92
72369--72404 18 2.0 18 100 0 72 33 11 11 44 1.75
72890--72918 14 2.0 15 93 6 51 10 6 6 75 1.17
75422--75477 8 6.9 8 78 15 53 32 3 0 64 1.11
75413--75493 33 2.6 33 83 9 91 34 3 0 61 1.14
75438--75486 25 2.0 25 88 8 73 38 0 0 61 0.96
75439--75500 24 2.5 24 82 7 63 38 0 1 59 1.07
87544--87579 18 2.0 18 100 0 72 22 22 11 44 1.84
92891--92979 42 2.1 42 85 8 117 13 25 10 50 1.73
92891--92980 21 4.1 22 83 9 105 13 25 10 51 1.72
95354--95420 24 3.6 18 74 25 59 32 5 23 37 1.79
95361--95413 24 2.2 24 100 0 106 33 7 24 33 1.84
103202--103231 12 2.4 13 94 5 53 26 6 0 66 1.16
103781--103820 20 2.0 20 100 0 80 25 15 20 40 1.90
116358--116404 24 2.0 24 91 0 76 23 8 0 68 1.17
117172--117210 19 2.1 19 100 0 78 51 0 20 28 1.48
117271--117295 1 25.0 1 100 0 50 0 0 0 100 0.00
142759--142798 20 2.0 20 100 0 80 40 20 15 25 1.90
151167--151219 24 2.2 24 100 0 106 33 24 7 33 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151160--151223 18 3.2 19 73 26 53 35 25 6 32 1.81
153600--153689 21 4.1 21 80 9 92 51 10 25 13 1.72
153601--153689 42 2.1 43 85 8 119 50 10 25 13 1.73
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Tables: 1
The End!