MT165912.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT165912.1 Holoptelea integrifolia voucher YXing882 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160252
Tables: 1
This is table 1 of 1 ( 95 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
124--148 12 2.1 12 100 0 50 64 0 0 36 0.94
141--169 11 2.7 11 94 5 51 37 0 0 62 0.96
4892--4925 17 2.0 17 100 0 68 41 11 0 47 1.40
6557--6606 10 5.2 10 84 15 70 30 0 0 70 0.88
6557--6631 18 4.2 18 78 8 82 33 0 1 65 1.01
6557--6606 3 16.7 3 76 15 50 30 0 0 70 0.88
6590--6649 26 2.3 26 88 8 88 40 1 5 53 1.33
6662--6703 21 2.0 21 95 0 75 33 11 2 52 1.51
7054--7086 16 2.1 16 88 11 50 45 3 6 45 1.43
7147--7171 11 2.3 11 100 0 50 40 8 20 32 1.81
8622--8663 21 2.0 21 100 0 84 57 14 14 14 1.66
8729--8765 13 3.0 13 92 7 60 45 0 0 54 1.00
8783--8814 16 2.0 16 100 0 64 37 0 6 56 1.25
8947--8977 15 2.1 15 100 0 62 54 6 6 32 1.51
8962--9003 22 1.9 22 100 0 84 61 4 4 28 1.36
8927--8999 37 2.0 35 92 5 119 54 5 5 34 1.46
8922--9001 20 4.2 20 79 20 98 56 5 5 33 1.43
9117--9156 19 2.1 19 95 0 71 60 0 5 35 1.19
9123--9164 19 2.2 19 86 0 57 64 0 7 28 1.20
10389--10441 25 2.1 25 96 0 97 49 0 5 45 1.26
10752--10782 16 1.9 16 93 0 53 22 12 0 64 1.27
13981--14013 17 1.9 17 100 0 66 42 12 15 30 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
21956--21989 17 2.0 17 88 0 50 32 17 11 38 1.86
21977--22031 28 2.0 28 92 0 92 38 14 16 30 1.89
29868--29904 18 2.1 18 100 0 74 37 5 0 56 1.22
30042--30072 15 2.1 15 100 0 62 32 12 12 41 1.81
32765--32823 24 2.5 23 74 17 59 18 5 1 74 1.09
33585--33648 17 4.0 16 75 24 64 64 0 0 35 0.94
33598--33637 12 3.3 12 86 13 64 65 0 0 35 0.93
33586--33648 24 2.7 24 79 20 87 63 0 0 36 0.95
33600--33639 11 3.5 11 87 12 62 65 0 0 35 0.93
34067--34121 14 3.8 14 77 17 67 27 10 9 52 1.66
34083--34135 16 3.4 16 73 19 58 26 16 9 47 1.77
34069--34138 30 2.3 30 95 0 122 27 14 10 48 1.75
37801--37838 19 2.0 19 94 0 67 44 13 10 31 1.77
38428--38475 17 2.8 17 100 0 96 58 0 0 41 0.98
38442--38556 3 39.3 3 69 20 66 61 0 0 37 1.02
38462--38589 13 9.9 13 69 23 60 60 1 0 37 1.06
38428--38542 16 7.5 16 74 20 70 61 0 0 37 1.02
38459--38548 25 3.6 24 84 10 92 62 1 0 36 1.03
38428--38587 17 8.5 19 74 15 77 60 1 0 38 1.05
38511--38558 25 1.9 25 100 0 96 58 0 0 41 0.98
38623--38652 15 2.0 15 100 0 60 46 6 0 46 1.29
38645--38711 20 3.3 20 95 0 107 46 5 7 40 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38989--39045 19 3.0 19 100 0 114 42 0 5 52 1.24
38997--39046 5 10.4 5 74 8 50 42 0 4 54 1.19
49001--49033 16 2.0 17 88 5 50 66 3 6 24 1.28
49111--49151 22 1.9 21 95 5 73 68 0 9 21 1.18
49724--49788 26 2.6 25 83 7 89 35 3 0 61 1.12
49749--49890 23 7.0 21 76 18 83 38 2 0 59 1.12
49755--49892 19 6.7 21 73 18 112 38 2 0 58 1.13
49781--49882 36 2.8 36 84 13 111 38 2 0 58 1.13
49777--49850 2 41.5 2 71 22 58 43 1 0 55 1.08
49833--49914 39 2.1 39 86 4 112 32 3 1 62 1.21
51997--52038 21 2.0 21 95 0 75 50 2 19 28 1.60
54501--54538 19 2.0 19 89 0 58 47 5 5 42 1.48
54576--54614 12 3.1 14 82 17 50 58 0 5 35 1.20
54606--54655 26 1.9 26 92 8 84 46 2 8 44 1.44
54594--54647 13 4.2 13 77 11 58 51 0 7 40 1.30
58465--58490 13 2.0 13 100 0 52 38 0 15 46 1.46
60273--60332 21 2.8 21 94 2 102 25 0 3 71 1.01
62566--62636 14 4.9 14 74 10 63 42 1 0 56 1.08
62553--62609 25 2.1 28 84 15 77 38 1 0 59 1.08
62581--62626 17 2.6 17 86 10 58 41 0 0 58 0.98
62587--62636 17 3.0 17 85 8 59 42 2 0 56 1.11
62689--62741 26 2.0 26 92 0 88 22 16 9 50 1.74
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66805--66846 20 2.0 21 95 4 77 52 0 4 42 1.22
69184--69229 21 2.2 21 100 0 92 19 21 4 54 1.61
69223--69252 15 2.0 15 100 0 60 13 6 13 66 1.43
71574--71604 16 1.9 16 100 0 62 70 6 12 9 1.31
71574--71608 17 2.1 17 89 5 54 68 11 11 8 1.39
74447--74481 17 2.1 17 100 0 70 57 17 0 25 1.40
74973--75003 15 2.1 15 93 0 53 35 3 6 54 1.42
74988--75070 38 2.3 37 79 8 98 31 8 2 57 1.41
75010--75067 19 3.1 19 100 0 116 31 10 0 58 1.31
75929--75956 14 2.0 14 100 0 56 42 14 14 28 1.84
76151--76182 16 2.0 16 93 0 55 46 15 6 31 1.71
80345--80393 22 2.2 22 100 0 98 32 6 8 53 1.55
84531--84566 18 2.0 18 94 0 63 41 2 5 50 1.40
84661--84699 19 2.1 19 100 0 78 28 20 5 46 1.72
93130--93197 21 3.2 21 82 0 82 11 22 7 58 1.57
95556--95594 18 2.2 18 100 0 78 33 5 25 35 1.78
102739--102763 12 2.1 12 100 0 50 8 8 8 76 1.18
111382--111479 32 3.1 32 98 0 187 40 24 9 25 1.84
118169--118207 16 2.6 14 81 14 51 33 0 0 66 0.92
118176--118207 16 2.0 16 100 0 64 31 0 0 68 0.90
118293--118350 15 3.9 15 95 0 98 58 0 6 34 1.25
122334--122367 17 2.0 17 100 0 68 47 0 0 52 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
122952--122982 16 1.9 16 100 0 62 38 16 0 45 1.47
125814--125854 20 2.0 20 95 0 73 53 2 0 43 1.13
131661--131697 18 2.1 18 89 0 56 37 0 21 40 1.54
136852--136949 32 3.1 32 98 0 187 25 9 24 40 1.84
145568--145592 12 2.1 12 100 0 50 76 8 8 8 1.18
152737--152775 18 2.2 18 100 0 78 35 25 5 33 1.78
155135--155223 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!