MT165943.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT165943.1 Ulmus rubra voucher No. 17655 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159202
Tables: 1
This is table 1 of 1 ( 109 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100--150 16 3.1 17 80 8 61 66 1 1 29 1.13
1586--1622 18 2.1 18 100 0 74 32 10 5 51 1.60
1672--1697 13 2.0 13 100 0 52 23 7 7 61 1.49
4363--4416 23 2.4 22 78 6 54 62 11 5 20 1.47
4360--4416 22 2.6 21 78 10 60 63 10 5 21 1.46
4466--4512 17 2.8 17 93 0 76 27 10 4 57 1.51
5112--5146 14 2.6 14 86 4 54 54 5 0 40 1.24
6590--6615 13 2.0 13 100 0 52 69 7 0 23 1.14
7322--7357 13 2.8 13 95 4 65 75 0 8 16 1.04
9109--9172 22 2.9 22 88 6 85 31 3 0 65 1.08
9122--9172 12 4.4 12 82 9 70 33 1 0 64 1.05
9191--9302 2 64.0 2 66 25 67 47 0 0 52 1.00
9179--9303 22 5.3 23 75 21 109 48 0 0 52 1.00
9170--9267 12 8.3 12 78 19 93 48 0 0 51 1.00
9146--9301 35 4.6 34 78 15 148 45 0 0 54 0.99
9173--9316 69 2.1 68 79 6 157 50 0 0 49 1.00
9525--9550 13 2.0 13 100 0 52 30 23 15 30 1.95
10572--10603 15 2.1 15 100 0 64 18 6 0 75 1.01
10658--10783 26 5.0 26 77 20 119 56 0 2 41 1.12
10666--10783 24 4.8 24 77 20 111 56 0 1 41 1.09
10675--10752 28 2.8 29 92 5 133 57 0 1 41 1.07
10722--10782 17 3.0 20 79 20 74 60 0 0 39 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
11050--11092 21 2.0 21 100 0 86 27 11 13 46 1.78
14366--14399 17 2.0 17 100 0 68 41 11 17 29 1.85
21821--21876 27 2.0 28 93 3 96 37 12 19 30 1.89
28098--28129 15 2.1 15 100 0 64 34 25 0 40 1.56
29604--29628 12 2.1 12 100 0 50 32 24 0 44 1.54
29768--29796 14 2.1 14 100 0 58 48 6 0 44 1.29
29853--29911 11 5.5 11 78 17 61 33 3 0 62 1.12
29839--29897 19 3.2 19 80 9 68 35 3 0 61 1.13
29835--29911 32 2.4 33 87 12 115 36 2 0 61 1.10
29859--29919 11 5.5 12 74 20 53 32 3 0 63 1.10
31036--31064 14 2.1 14 100 0 58 20 6 13 58 1.58
33739--33768 15 2.0 15 100 0 60 46 0 20 33 1.51
33775--33808 16 2.1 16 94 0 59 29 11 5 52 1.61
33830--33876 15 3.5 15 67 27 50 55 0 2 42 1.12
33830--33889 25 2.4 25 94 2 104 55 0 3 41 1.16
33961--34006 17 2.8 16 83 9 56 47 2 8 41 1.46
37713--37750 19 2.0 19 94 0 67 47 7 10 34 1.67
38397--38422 13 2.0 13 100 0 52 69 0 0 30 0.89
38389--38441 18 3.1 18 74 20 67 60 3 0 35 1.15
46441--46472 16 2.0 16 93 0 55 78 0 0 21 0.76
47150--47196 11 4.2 11 75 24 53 51 10 6 31 1.62
47159--47204 23 2.0 23 100 0 92 52 13 4 30 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47870--47913 11 4.1 11 88 5 63 29 9 0 61 1.27
47865--47909 21 2.1 21 95 0 81 24 11 0 64 1.26
48665--48706 18 2.3 19 79 4 50 71 2 7 19 1.20
49397--49439 15 2.8 15 83 13 52 27 2 4 65 1.25
49420--49516 39 2.6 38 78 14 94 25 7 2 64 1.30
51441--51465 12 2.1 12 100 0 50 52 0 16 32 1.44
54160--54209 23 2.1 24 92 7 84 34 8 4 54 1.49
54218--54242 12 2.1 12 100 0 50 36 8 0 56 1.29
54244--54308 24 2.8 22 73 17 60 38 1 1 58 1.17
54316--54356 20 2.0 20 100 0 82 53 4 4 36 1.44
58083--58108 13 2.0 13 100 0 52 38 0 15 46 1.46
59895--59945 19 2.5 21 81 9 70 11 1 3 82 0.89
59984--60014 16 1.9 16 93 0 53 35 3 0 61 1.12
60030--60058 14 2.0 15 93 6 51 41 0 10 48 1.37
60039--60082 23 1.9 23 81 9 54 34 2 6 56 1.38
60860--60913 27 2.0 27 100 0 108 40 11 14 33 1.82
61231--61260 15 2.0 15 93 0 51 53 6 16 23 1.66
62333--62357 13 1.9 13 100 0 50 44 0 0 56 0.99
66156--66188 11 3.0 11 100 0 66 45 9 18 27 1.79
68113--68141 14 2.1 14 100 0 58 51 6 13 27 1.66
69548--69587 14 3.0 14 85 10 57 40 7 0 52 1.30
69552--69590 12 3.0 13 88 7 53 43 7 0 48 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70990--71053 24 2.8 22 80 13 76 42 6 0 51 1.27
71129--71159 16 1.9 16 100 0 62 70 6 12 9 1.31
71167--71205 21 1.9 21 94 5 71 30 25 10 33 1.89
74435--74487 10 5.1 10 84 8 70 37 3 0 58 1.16
74433--74487 21 2.6 21 94 0 92 36 5 0 58 1.21
75348--75396 24 2.0 24 100 0 98 71 4 20 4 1.19
75422--75466 22 2.0 22 95 0 81 48 2 17 31 1.59
78630--78670 16 2.6 16 92 3 66 68 9 7 14 1.39
79773--79797 11 2.3 11 100 0 50 64 8 0 28 1.22
84034--84067 16 2.1 16 100 0 68 55 11 0 32 1.36
84530--84561 16 2.0 16 100 0 64 56 12 12 18 1.67
85237--85295 12 5.2 12 73 19 63 44 0 15 40 1.46
85242--85289 24 2.0 24 100 0 96 45 0 16 37 1.48
88408--88436 12 2.3 13 94 5 51 37 6 0 55 1.27
92611--92678 21 3.2 21 82 0 82 11 22 7 58 1.57
95028--95066 18 2.2 18 100 0 78 33 5 25 35 1.78
97340--97366 13 2.1 13 100 0 54 40 7 14 37 1.74
110902--110967 32 2.1 32 97 0 123 40 24 9 25 1.84
116450--116491 20 2.1 20 90 0 66 40 4 0 54 1.21
116899--116933 12 2.9 12 95 0 61 37 22 5 34 1.78
117514--117574 20 3.0 20 81 9 72 73 0 6 19 1.04
117545--117596 16 3.1 16 83 8 50 69 0 7 23 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117566--117606 19 2.2 18 95 4 73 60 0 7 31 1.24
118343--118382 20 2.0 20 100 0 80 60 0 5 35 1.19
123379--123414 18 2.0 18 100 0 72 38 16 0 44 1.48
124784--124886 17 6.1 17 74 20 74 65 0 0 33 1.00
124815--124883 21 3.0 21 77 22 84 65 0 1 33 1.02
124785--124877 38 2.5 37 83 13 102 64 0 1 34 1.01
124783--124889 27 3.9 27 80 11 112 64 0 1 33 1.04
124912--124942 16 2.0 15 93 6 53 41 0 0 58 0.98
124918--124969 16 3.2 18 79 15 51 51 0 0 48 1.00
124919--124967 15 3.2 15 85 8 55 53 0 0 46 1.00
125252--125291 20 2.0 20 100 0 80 55 0 25 20 1.44
125364--125393 11 2.6 11 94 5 51 36 3 0 60 1.14
131720--131755 13 2.7 13 86 4 54 0 16 0 83 0.65
131720--131773 28 1.9 29 85 7 76 3 16 1 77 1.00
132076--132125 24 2.1 24 100 0 100 22 4 16 58 1.55
135773--135838 32 2.1 32 97 0 123 25 9 24 40 1.84
149374--149400 13 2.1 13 100 0 54 37 14 7 40 1.74
151674--151712 18 2.2 18 100 0 78 35 25 5 33 1.78
154063--154151 21 4.1 21 81 5 81 56 7 23 12 1.62
158304--158332 12 2.3 13 94 5 51 55 0 6 37 1.27
159121--159150 11 2.8 11 95 5 53 6 0 0 93 0.35
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Tables: 1
The End!