MT381996.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT381996.1 Luffa acutangula chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157202
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4621--4652 13 2.3 15 89 10 50 59 0 0 40 0.97
9079--9145 16 4.1 16 84 7 89 46 4 4 44 1.43
9090--9145 18 3.2 18 80 14 64 46 5 3 44 1.43
9079--9135 8 6.9 8 74 21 55 47 3 3 45 1.37
10545--10582 18 2.1 18 90 0 58 50 0 0 50 1.00
11201--11243 15 2.9 15 83 12 54 30 0 4 65 1.13
29682--29717 17 2.1 17 89 0 54 44 2 13 38 1.59
29995--30041 18 2.7 18 83 3 60 42 21 8 27 1.81
32596--32649 19 2.9 19 91 2 83 51 3 1 42 1.30
34127--34156 15 2.0 15 93 0 51 56 6 23 13 1.60
37278--37306 14 2.1 14 100 0 58 27 0 6 65 1.18
38040--38083 13 3.3 13 81 15 54 54 0 0 45 0.99
38037--38098 20 3.0 20 86 6 72 56 0 0 43 0.99
38052--38101 18 2.8 19 91 8 79 52 0 0 48 1.00
38039--38107 18 3.7 20 79 18 76 53 0 0 46 1.00
46053--46083 16 1.9 16 100 0 62 25 6 19 48 1.72
61667--61700 12 3.0 12 91 8 54 61 8 0 29 1.26
67230--67276 17 2.8 17 93 0 76 44 0 4 51 1.21
71667--71715 23 2.1 24 92 3 82 40 24 16 18 1.90
73868--73901 17 2.0 17 100 0 68 47 5 11 35 1.65
90973--91055 21 3.7 23 75 18 77 13 22 9 54 1.68
90995--91062 21 3.2 21 82 0 82 11 22 7 58 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93421--93477 18 3.2 18 94 0 105 31 5 28 35 1.79
93421--93477 9 6.3 9 72 0 51 31 5 28 35 1.79
109650--109715 32 2.1 32 97 0 123 40 24 9 25 1.84
126444--126471 14 2.0 14 100 0 56 35 28 0 35 1.58
129149--129190 21 2.0 21 100 0 84 23 4 4 66 1.30
133709--133774 32 2.1 32 97 0 123 25 9 24 40 1.84
149951--150007 18 3.2 18 94 0 105 35 28 5 31 1.79
149951--150007 9 6.3 9 72 0 51 35 28 5 31 1.79
152367--152455 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!