MT473761.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT473761.1 Gmelina arborea chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154369
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6974--7008 16 2.2 16 90 10 54 45 5 5 42 1.51
9101--9134 11 3.2 11 87 8 52 29 0 0 70 0.87
9335--9364 12 2.6 12 94 5 53 43 0 0 56 0.99
12234--12260 12 2.2 12 100 0 54 48 0 18 33 1.49
12763--12788 13 2.0 13 100 0 52 30 38 7 23 1.83
15997--16036 19 2.1 19 95 0 71 42 12 5 40 1.64
30335--30399 29 2.3 29 97 2 123 30 12 18 38 1.88
30482--30507 13 2.0 13 100 0 52 38 7 15 38 1.76
32216--32261 21 2.1 22 92 4 76 41 2 6 50 1.40
32891--32918 14 2.0 14 100 0 56 21 21 7 50 1.72
43286--43311 13 2.0 13 100 0 52 46 7 0 46 1.31
43325--43396 14 5.4 14 80 11 73 54 13 6 25 1.64
47944--47986 15 2.9 14 83 10 59 23 16 0 60 1.35
51667--51695 13 2.2 13 100 0 58 44 0 20 34 1.52
58202--58253 11 4.6 11 77 11 52 26 3 13 55 1.55
58206--58257 24 2.2 24 93 3 88 26 5 13 53 1.62
60635--60677 17 2.6 16 81 3 50 51 9 2 37 1.47
61173--61217 21 2.1 21 91 0 72 26 22 17 33 1.96
64974--65015 5 8.4 5 84 10 59 59 0 0 40 0.97
64970--65016 21 2.2 20 92 7 76 61 0 0 38 0.96
64974--65012 16 2.5 16 91 4 62 58 0 0 41 0.98
64962--65022 16 3.9 15 74 18 54 63 0 0 36 0.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
75492--75516 12 2.1 12 100 0 50 16 16 0 68 1.22
87433--87472 20 2.0 20 90 0 62 42 10 20 27 1.83
90043--90097 24 2.5 22 85 8 67 14 23 12 49 1.78
90065--90132 21 3.2 21 77 8 75 11 22 10 55 1.65
92467--92521 18 3.1 18 100 0 110 27 12 27 32 1.93
100219--100253 17 2.0 18 94 5 63 28 0 22 48 1.51
105083--105118 10 3.7 10 88 7 56 30 0 0 69 0.89
108207--108267 31 2.0 31 93 0 104 40 21 9 27 1.85
112538--112576 20 2.0 20 85 10 53 56 25 0 17 1.41
124154--124189 18 2.0 18 100 0 72 11 5 16 66 1.40
124156--124195 18 2.2 18 90 0 62 17 7 12 62 1.52
127402--127436 14 2.5 14 90 0 61 0 17 5 77 0.96
131344--131404 31 2.0 31 93 0 104 27 9 21 40 1.85
134493--134528 10 3.7 10 88 7 56 69 0 0 30 0.89
139358--139392 17 2.0 18 94 5 63 48 22 0 28 1.51
139385--139430 23 2.0 23 86 0 65 60 6 6 26 1.46
147090--147144 18 3.1 18 100 0 110 32 27 12 27 1.93
149497--149550 21 2.6 21 82 11 74 59 11 20 9 1.59
149479--149568 21 4.1 22 75 8 67 53 11 23 12 1.70
152139--152178 20 2.0 20 90 0 62 27 20 10 42 1.83
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Tables: 1
The End!