MT561041.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT561041.1 Cnidium monnieri chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 147269
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
227--275 24 2.0 24 92 0 80 20 12 8 59 1.58
367--396 12 2.5 12 88 0 51 6 6 0 86 0.70
848--884 18 2.1 18 100 0 74 37 10 10 40 1.75
1173--1217 22 2.0 22 100 0 90 20 0 13 66 1.24
7283--7310 14 2.0 14 100 0 56 35 21 0 42 1.53
21882--21978 49 2.0 49 89 0 149 29 17 20 31 1.96
28920--28950 14 2.2 14 100 0 62 35 0 6 58 1.24
30871--30903 16 2.1 16 100 0 66 57 6 24 12 1.57
33851--33888 12 3.5 11 89 10 60 2 5 0 92 0.47
46762--46786 1 25.0 1 100 0 50 100 0 0 0 0.00
48588--48637 13 4.0 13 84 10 68 40 8 2 50 1.43
48597--48624 11 2.5 11 100 0 56 39 7 0 53 1.28
48588--48637 24 2.1 24 92 0 82 40 8 2 50 1.43
54129--54172 22 2.0 22 100 0 88 40 9 18 31 1.81
63737--63763 14 1.9 14 100 0 54 40 14 7 37 1.74
68168--68201 13 2.6 13 90 0 59 41 0 0 58 0.98
69556--69601 24 1.9 24 90 0 74 52 4 4 39 1.41
69692--69732 21 2.0 21 90 0 64 26 26 12 34 1.92
75972--76008 19 1.9 19 94 0 65 54 13 8 24 1.66
79567--79596 7 4.3 7 95 0 51 26 16 0 56 1.40
83541--83574 14 2.4 14 90 5 50 38 2 2 55 1.30
90153--90220 21 3.2 21 77 8 75 11 22 8 57 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91322--91365 15 2.9 15 93 0 70 27 34 13 25 1.93
92585--92668 18 4.7 18 96 0 141 28 7 29 34 1.84
103722--103762 20 2.0 20 95 0 73 53 14 26 4 1.61
108388--108453 32 2.1 32 97 0 123 40 24 9 25 1.84
114466--114519 18 3.2 18 71 28 64 37 5 9 48 1.59
133077--133142 32 2.1 32 97 0 123 25 9 24 40 1.84
137769--137809 20 2.0 20 95 0 73 4 26 14 53 1.61
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Tables: 1
The End!