MT900005.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT900005.1 UNVERIFIED: Plantago major subsp. major chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 102529
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1736--1812 38 2.1 37 90 4 120 44 9 19 27 1.81
5846--5871 13 2.0 13 100 0 52 38 23 0 38 1.55
14235--14259 12 2.1 12 100 0 50 28 16 16 40 1.89
23007--23031 12 2.1 12 100 0 50 32 32 0 36 1.58
23242--23289 16 3.0 16 100 0 96 43 12 18 25 1.85
49497--49661 41 4.1 39 78 11 172 40 10 17 30 1.84
49502--49644 41 3.5 41 87 4 193 40 11 16 31 1.84
49841--49883 19 2.3 19 100 0 86 25 27 4 41 1.75
50775--50937 15 10.9 15 82 2 193 31 9 24 34 1.87
53148--53184 17 2.2 17 100 0 74 10 16 0 72 1.10
57976--58012 16 2.2 17 90 4 58 32 5 10 51 1.60
59124--59164 17 2.5 17 81 14 50 4 19 0 75 0.98
60122--60241 60 2.0 60 93 0 204 50 15 12 21 1.76
60467--60542 37 2.1 37 100 0 152 13 39 18 28 1.88
61887--61924 10 3.8 10 93 6 60 18 10 2 68 1.30
66009--66090 40 2.0 40 100 0 164 24 14 26 34 1.94
68155--68215 31 2.0 31 96 0 113 27 9 22 39 1.86
80715--80857 71 2.0 71 100 0 286 30 19 16 32 1.94
89883--89910 14 2.0 14 100 0 56 28 0 21 50 1.49
98523--98552 9 3.2 9 95 4 51 13 20 0 66 1.24
99903--99980 15 5.2 15 85 3 59 8 21 11 57 1.61
99925--99981 15 3.8 15 95 0 105 12 19 8 59 1.58
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Tables: 1
The End!