MT980792.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT980792.1 Lycopus lucidus var. hirtus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152096
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4616--4644 12 2.3 13 94 5 51 58 6 10 24 1.55
6195--6241 17 2.8 17 90 3 69 53 4 8 34 1.51
6228--6257 12 2.6 12 94 5 53 60 0 6 33 1.23
6195--6247 16 3.2 16 86 5 70 54 3 7 33 1.46
6629--6655 13 2.1 13 100 0 54 29 0 22 48 1.51
8258--8291 17 1.9 17 94 5 59 70 0 8 20 1.13
30808--30832 13 1.9 13 100 0 50 32 8 0 60 1.26
31362--31405 20 2.2 20 100 0 88 25 18 4 52 1.64
31843--31872 15 2.0 15 100 0 60 60 6 13 20 1.55
41507--41579 15 5.4 14 73 20 66 39 0 4 56 1.19
41507--41573 24 2.7 24 80 17 75 40 0 4 55 1.20
41507--41579 26 2.8 24 76 21 76 39 0 4 56 1.19
56664--56697 17 2.0 17 100 0 68 29 23 5 41 1.78
58354--58385 16 2.0 16 100 0 64 25 18 18 37 1.94
62588--62620 17 1.9 17 100 0 66 27 30 12 30 1.92
63120--63151 15 2.1 15 94 0 55 43 18 9 28 1.81
87910--87964 24 2.5 22 85 8 67 14 23 12 49 1.78
87932--87999 21 3.2 21 77 8 75 11 22 10 55 1.65
90316--90405 18 5.2 18 94 4 141 31 7 25 35 1.84
90328--90404 9 8.6 9 72 0 64 31 9 27 32 1.88
98119--98168 11 4.5 11 82 12 59 32 2 18 48 1.59
98124--98175 17 3.1 16 82 15 61 30 1 21 46 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106102--106162 31 2.0 31 93 0 104 40 21 9 27 1.85
125150--125192 14 3.1 14 83 3 52 0 18 2 79 0.85
129046--129106 31 2.0 31 93 0 104 27 9 21 40 1.85
137033--137067 17 2.0 18 94 5 63 48 22 0 28 1.51
137071--137116 23 2.0 23 86 0 65 60 6 6 26 1.46
144816--144879 9 7.1 9 74 0 65 34 28 6 31 1.82
144803--144892 18 5.2 18 94 4 141 35 25 7 31 1.84
147227--147280 21 2.6 21 82 11 74 59 11 20 9 1.59
147209--147298 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!