MW801100.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MW801100.1 UNVERIFIED: Ilex chinensis chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 157883
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4858--4897 20 2.0 20 85 9 55 62 2 0 35 1.09
9387--9430 22 2.0 22 95 0 79 20 18 11 50 1.77
21822--21851 15 2.0 15 93 0 51 33 13 23 30 1.93
39181--39205 12 2.1 12 100 0 50 56 0 20 24 1.43
46634--46666 17 1.9 17 93 0 57 45 9 18 27 1.79
47956--48014 15 3.8 15 74 14 57 25 11 0 62 1.29
47948--48019 31 2.3 31 97 0 135 25 9 0 65 1.23
52921--52975 27 2.0 27 96 0 101 58 7 12 21 1.59
57484--57508 13 1.9 13 100 0 50 32 4 24 40 1.73
60016--60051 18 2.0 18 100 0 72 27 11 22 38 1.88
62152--62176 12 2.1 12 100 0 50 60 24 8 8 1.52
71015--71054 21 1.9 21 94 0 71 30 22 10 37 1.87
82457--82504 24 2.0 24 87 0 69 29 31 14 25 1.95
82600--82626 13 2.1 13 100 0 54 22 7 7 62 1.46
92061--92115 24 2.5 22 85 8 67 14 23 12 49 1.78
92083--92150 21 3.2 21 77 8 75 11 22 8 57 1.61
94500--94589 18 5.2 18 92 4 132 32 7 24 35 1.84
94512--94588 9 8.6 9 69 0 55 32 9 25 32 1.87
102484--102539 28 2.0 29 85 3 78 28 5 8 57 1.52
110671--110736 32 2.1 32 97 0 123 37 27 9 25 1.86
130432--130480 13 3.4 15 72 18 50 0 24 6 69 1.11
130421--130481 28 2.2 28 86 11 83 0 26 4 68 1.09
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
134436--134501 32 2.1 32 97 0 123 25 9 27 37 1.86
150614--150659 9 5.1 9 78 0 56 34 28 4 32 1.77
150583--150672 18 5.2 18 92 4 132 35 24 7 32 1.84
153022--153111 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!