MZ322397.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MZ322397.1 Hedysarum polybotrys chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 122232
Tables: 1
This is table 1 of 1 ( 51 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
218--243 13 2.0 13 100 0 52 69 7 7 15 1.35
4302--4357 28 2.0 28 100 0 112 39 7 10 42 1.67
7274--7315 11 3.9 11 85 14 61 30 4 0 64 1.14
7274--7317 22 2.0 22 100 0 88 31 4 0 63 1.14
10431--10475 12 4.0 12 83 16 69 55 0 8 35 1.31
10431--10472 21 2.0 21 100 0 84 52 0 9 38 1.34
15618--15655 18 2.1 18 100 0 76 44 13 15 26 1.83
15666--15713 24 2.0 24 95 0 87 33 0 35 31 1.58
29384--29417 17 2.0 17 94 0 59 52 14 8 23 1.69
31473--31499 14 1.9 14 100 0 54 29 22 0 48 1.51
44256--44309 25 2.2 25 96 3 101 61 0 7 31 1.24
52940--52994 22 2.6 22 80 5 69 18 3 10 67 1.35
52999--53040 16 2.6 16 88 3 57 28 2 7 61 1.35
53496--53587 32 3.2 32 62 26 85 31 13 25 30 1.93
53468--53621 55 2.8 55 97 1 290 31 12 28 26 1.93
53510--53595 23 3.1 27 61 26 63 31 15 26 26 1.95
53530--54004 143 3.3 143 98 0 900 29 17 24 29 1.97
53869--54070 88 2.3 88 99 0 395 28 18 23 28 1.98
54201--54315 60 1.9 60 94 1 203 40 11 25 22 1.87
54725--54751 9 3.0 9 100 0 54 22 22 22 33 1.97
54761--54920 12 13.3 12 86 0 158 56 2 18 22 1.54
54776--54920 36 4.0 36 86 0 191 55 2 17 23 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54984--55024 12 3.4 12 89 0 64 43 19 12 24 1.85
55060--55113 18 3.0 18 84 10 74 50 16 14 18 1.79
55327--55365 12 3.2 12 85 0 51 41 12 23 23 1.88
55797--55867 27 2.6 27 100 0 142 35 15 36 12 1.86
58443--58481 16 2.4 16 95 0 69 56 10 5 28 1.54
58823--58874 18 2.9 18 85 0 68 13 19 11 55 1.68
58879--59000 54 2.2 54 98 1 235 51 13 18 16 1.76
64470--64507 18 2.1 18 95 0 67 52 5 10 31 1.58
69236--69645 139 3.0 139 97 1 776 28 20 21 28 1.98
75758--75809 19 2.7 20 70 14 54 42 5 9 42 1.61
81612--81671 20 3.0 19 83 9 66 58 0 5 36 1.20
81948--82091 13 11.4 13 76 15 117 61 4 2 31 1.29
81916--82113 50 3.9 50 97 2 360 62 3 4 30 1.29
87376--87465 21 4.3 21 97 0 162 20 21 24 34 1.96
102702--102770 30 2.2 32 82 15 97 55 7 10 27 1.60
102713--102780 30 2.3 30 100 0 136 51 8 10 29 1.66
102779--102866 17 5.6 15 95 4 108 53 15 5 25 1.64
102788--102870 17 5.1 17 95 4 145 53 16 6 24 1.66
103675--103789 24 4.8 24 100 0 230 50 0 28 20 1.49
104823--104889 13 5.5 13 65 13 52 56 10 20 11 1.64
104820--104891 24 3.0 24 100 0 144 54 12 20 12 1.70
105839--105866 12 2.3 12 100 0 56 71 0 21 7 1.09
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106193--106289 51 1.9 51 91 0 158 35 13 10 41 1.78
107576--107816 84 2.9 84 98 0 464 48 18 19 14 1.81
108826--108879 27 2.0 27 88 0 81 38 9 3 48 1.53
113536--113578 23 1.9 22 95 4 77 60 0 2 37 1.10
113542--113591 17 3.1 16 75 18 59 62 0 4 34 1.14
118388--118427 19 2.0 20 90 4 64 65 2 5 27 1.27
118379--118429 24 2.1 24 82 13 61 66 3 3 25 1.26
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Tables: 1
The End!