MZ901878.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MZ901878.1 UNVERIFIED: Shorea robusta chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 152130
Tables: 1
This is table 1 of 1 ( 72 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12609--12661 18 2.9 18 94 2 88 16 49 3 30 1.64
12628--12726 19 5.3 19 86 1 128 20 42 2 35 1.64
14273--14314 21 2.0 21 95 0 75 38 16 23 21 1.93
14577--14662 21 4.1 21 89 3 120 30 16 23 30 1.96
14712--14742 2 16.0 2 93 6 55 48 0 0 51 1.00
15102--15130 12 2.3 13 94 5 51 62 6 0 31 1.22
16311--16359 15 3.3 15 97 0 89 44 0 12 42 1.41
16308--16400 30 3.0 30 77 6 87 39 3 11 45 1.57
17943--17980 19 2.0 19 94 0 67 52 0 7 39 1.31
19810--19840 14 2.1 15 94 5 55 22 6 6 64 1.40
24744--24835 36 2.6 36 89 3 132 30 23 11 33 1.91
24744--24820 18 4.3 18 98 0 136 28 23 11 36 1.90
25659--25711 15 3.5 15 94 0 97 39 7 20 32 1.81
32054--32084 15 2.1 15 100 0 62 19 0 12 67 1.22
32090--32126 18 2.1 18 94 0 65 29 8 0 62 1.24
36499--36523 12 2.1 12 100 0 50 24 16 0 60 1.36
36758--36816 30 1.9 31 86 10 86 35 8 6 49 1.60
37166--37190 12 2.1 12 100 0 50 36 24 8 32 1.84
37275--37308 17 2.0 17 100 0 68 47 5 17 29 1.71
37364--37400 19 1.9 19 100 0 74 56 5 0 37 1.22
37368--37411 19 2.3 19 88 7 63 61 4 2 31 1.28
41627--41662 18 2.0 18 100 0 72 38 11 16 33 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47464--47530 11 6.1 11 79 6 73 62 2 0 34 1.10
47462--47532 23 3.2 23 78 6 83 61 2 0 35 1.10
52078--52103 13 2.0 13 100 0 52 38 23 15 23 1.92
52490--52556 30 2.2 29 82 10 73 61 1 4 32 1.25
52518--52591 13 5.6 14 78 12 77 63 0 5 31 1.17
52529--52567 17 2.4 17 95 4 71 64 0 5 30 1.15
52511--52583 30 2.4 30 80 15 87 63 0 5 31 1.17
52541--52597 22 2.6 22 94 2 98 68 0 3 28 1.06
52513--52589 39 2.0 38 87 7 111 63 0 5 31 1.16
53363--53392 15 2.0 15 100 0 60 40 0 20 40 1.52
56837--56869 16 2.1 16 100 0 66 69 0 12 18 1.18
57363--57396 17 2.0 17 100 0 68 23 11 11 52 1.70
61913--61942 13 2.3 13 100 0 60 36 0 6 56 1.26
68196--68243 16 3.0 16 100 0 96 31 6 12 50 1.65
69307--69340 14 2.4 14 90 0 50 52 8 2 35 1.47
76195--76223 15 1.9 15 100 0 58 27 31 0 41 1.56
77405--77433 14 2.1 14 100 0 58 44 6 0 48 1.29
77756--77811 19 2.8 20 84 13 62 55 1 5 37 1.33
77747--77803 22 2.6 22 83 8 73 52 3 3 40 1.35
77799--77840 21 2.0 21 95 0 75 54 4 7 33 1.49
78134--78193 20 3.0 20 100 0 120 40 20 10 30 1.85
82618--82651 2 17.5 2 87 6 52 44 0 2 52 1.16
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
84229--84253 13 1.9 13 100 0 50 44 0 8 48 1.32
86217--86366 35 4.1 35 91 8 255 55 2 8 34 1.43
86228--86357 40 3.4 40 89 10 225 55 2 6 35 1.39
86217--86357 75 1.9 75 100 0 282 54 2 7 35 1.42
90590--90637 24 2.0 24 91 0 78 33 18 18 29 1.95
92900--93020 24 5.0 24 96 0 215 47 7 16 28 1.74
108042--108146 11 9.5 11 92 0 174 74 3 0 21 0.98
108042--108146 33 3.2 33 98 0 201 74 3 0 21 0.98
108850--108885 18 2.0 18 94 0 63 27 0 25 47 1.52
111582--111609 2 14.0 2 100 0 56 50 0 0 50 1.00
111801--111834 17 2.0 17 100 0 68 64 5 5 23 1.38
111873--111943 2 38.0 2 71 18 55 49 2 2 45 1.31
111875--111938 12 5.4 12 75 14 62 50 3 3 43 1.33
111917--111965 16 3.0 16 85 11 64 48 0 2 48 1.12
111940--111987 23 2.1 23 100 0 96 56 0 4 39 1.19
127073--127215 15 9.1 15 82 8 169 11 27 2 58 1.44
127040--127203 66 2.5 66 91 2 253 10 29 1 57 1.42
127088--127186 51 1.9 51 91 0 162 10 29 2 58 1.42
127338--127404 21 3.2 21 81 8 73 40 14 7 37 1.75
127410--127584 87 2.0 87 91 2 280 38 18 10 33 1.84
128160--128234 35 2.1 35 100 0 150 29 2 10 57 1.46
128254--128358 11 9.5 11 92 0 174 21 0 3 74 0.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128254--128358 33 3.2 33 98 0 201 21 0 3 74 0.98
143380--143500 24 5.0 24 96 0 215 28 16 7 47 1.74
145763--145810 24 2.0 24 91 0 78 29 18 18 33 1.95
150043--150172 40 3.4 40 94 5 225 35 6 2 55 1.39
150043--150183 75 1.9 75 100 0 282 35 7 2 54 1.42
150034--150183 35 4.1 35 91 8 255 34 8 2 55 1.43
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Tables: 1
The End!