NC_001666.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_001666.2 Zea mays chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 140384
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4795--4826 16 2.0 16 100 0 64 31 18 12 37 1.88
6508--6534 13 2.1 13 100 0 54 51 22 0 25 1.48
12409--12459 19 2.7 19 100 0 102 29 33 27 9 1.89
12638--12676 19 2.1 19 100 0 78 35 0 5 58 1.20
12645--12707 22 2.8 22 70 18 58 38 0 4 57 1.20
13721--13745 12 2.1 12 100 0 50 36 16 16 32 1.90
15787--15836 25 2.0 25 92 0 82 44 8 6 42 1.58
15787--15836 13 4.0 12 79 7 55 44 8 6 42 1.58
15900--16029 67 1.9 67 88 0 197 30 16 25 28 1.96
18620--18648 14 2.0 15 93 6 51 75 0 17 6 1.01
18800--18831 15 2.1 15 100 0 64 18 12 9 59 1.59
19693--19757 26 2.6 26 92 7 109 40 4 26 29 1.76
19710--19766 26 2.2 26 87 6 80 43 3 22 29 1.70
20509--20598 5 18.6 5 75 19 75 61 2 1 35 1.16
20510--20597 8 10.4 8 72 16 70 62 2 1 34 1.15
20515--20575 19 3.2 18 75 13 59 62 3 1 32 1.21
20503--20597 39 2.5 39 86 11 126 61 3 1 34 1.19
20509--20598 44 2.1 43 89 2 135 61 2 1 35 1.16
26920--26960 21 2.0 21 100 0 82 26 29 14 29 1.95
27814--27842 15 1.9 15 100 0 58 27 34 17 20 1.95
28887--28970 21 4.0 20 82 3 78 39 14 33 13 1.84
29028--29119 21 4.4 21 75 5 78 43 14 22 19 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29022--29119 42 2.3 42 85 3 135 42 13 25 18 1.86
29041--29130 21 4.3 21 75 10 94 40 14 26 18 1.89
29206--29294 33 2.7 33 76 11 101 42 10 31 15 1.80
29274--29315 12 3.5 12 93 0 75 50 14 28 7 1.69
47889--47923 17 2.1 17 100 0 70 60 11 17 11 1.59
49654--49679 11 2.4 11 100 0 52 11 7 0 80 0.89
50036--50081 21 2.2 21 100 0 92 41 10 17 30 1.84
52617--52665 24 2.0 24 100 0 98 51 0 12 36 1.40
58962--58988 13 2.1 13 100 0 54 7 29 14 48 1.71
67369--67424 28 2.0 28 100 0 112 35 3 7 53 1.46
67372--67432 28 2.2 28 93 0 104 40 3 6 49 1.45
67540--67685 21 7.0 21 85 3 204 36 25 6 31 1.81
67544--67685 42 3.4 42 93 0 248 37 25 6 30 1.81
67973--68031 21 2.8 21 75 10 66 49 22 10 18 1.77
77825--77856 16 2.0 16 100 0 64 56 6 18 18 1.62
93896--93928 14 2.4 14 94 0 57 27 15 3 54 1.55
93921--93982 20 3.0 21 95 2 108 37 4 8 50 1.54
93922--93985 21 3.1 21 95 2 112 35 4 7 51 1.52
108007--108033 10 2.7 10 100 0 54 22 18 11 48 1.79
108718--108750 14 2.4 14 100 0 66 36 12 15 36 1.84
128752--128815 21 3.1 21 93 4 112 51 7 4 35 1.52
128756--128816 20 3.0 20 95 2 104 50 6 4 37 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128809--128841 14 2.4 14 94 0 57 54 3 15 27 1.55
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Tables: 1
The End!