NC_004561.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_004561.1 Atropa belladonna chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156687
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3682--3719 19 2.0 19 100 0 76 42 10 21 26 1.85
6372--6405 12 3.0 12 91 8 54 61 0 0 38 0.96
8494--8519 13 2.0 13 100 0 52 61 7 7 23 1.49
16855--16887 17 2.0 16 94 5 57 18 15 0 66 1.25
28762--28792 15 2.1 15 100 0 62 25 25 12 35 1.92
30714--30747 17 2.0 17 100 0 68 23 23 17 35 1.95
33137--33162 13 2.0 13 100 0 52 38 15 0 46 1.46
33150--33193 22 2.0 22 100 0 88 40 9 9 40 1.68
33537--33603 23 3.0 23 95 2 118 35 8 2 52 1.48
43719--43749 11 2.8 11 95 0 53 70 0 0 29 0.87
61604--61649 21 2.2 21 100 0 92 52 4 0 43 1.21
61612--61673 21 3.1 20 84 11 74 50 4 1 43 1.33
62901--62935 17 2.1 17 100 0 70 60 11 11 17 1.59
64426--64450 11 2.3 11 100 0 50 24 24 8 44 1.80
66115--66139 13 1.9 13 100 0 50 92 8 0 0 0.40
69529--69578 25 2.0 25 84 7 66 56 8 2 34 1.40
70776--70816 21 2.0 21 90 0 64 29 24 9 36 1.87
74482--74510 14 2.1 14 100 0 58 37 6 6 48 1.57
76846--76870 11 2.3 11 100 0 50 84 0 8 8 0.79
91694--91765 24 3.1 24 92 4 112 12 23 11 52 1.71
91694--91800 24 4.8 22 83 6 92 13 24 11 51 1.73
91716--91807 21 4.2 21 78 9 78 11 22 9 55 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94169--94228 18 3.3 18 88 0 93 31 10 25 33 1.89
102019--102070 18 3.0 17 88 8 70 32 3 5 57 1.40
102043--102106 18 3.6 19 87 10 75 39 0 12 48 1.41
102072--102109 18 2.1 18 100 0 76 34 0 15 50 1.45
109687--109752 32 2.1 32 94 0 114 42 22 9 25 1.83
114448--114486 20 2.0 20 85 10 53 56 23 0 20 1.42
133805--133870 32 2.1 32 94 0 114 25 9 22 42 1.83
141448--141485 18 2.1 18 100 0 76 50 15 0 34 1.45
141451--141514 18 3.6 19 85 12 75 48 12 0 39 1.41
141482--141538 18 3.1 19 85 9 75 57 5 3 33 1.38
149329--149388 18 3.3 18 88 0 93 33 25 10 31 1.89
151768--151821 21 2.6 21 82 11 74 59 11 20 9 1.59
151751--151820 21 3.4 19 72 16 59 57 8 22 11 1.61
151792--151863 24 3.1 24 92 4 112 52 11 23 12 1.71
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Tables: 1
The End!